Nnit032589.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphula nitidulata
Gene Symbol
-
Assembly
GCA_947347705.1
Location
OX374644.1:1265298-1269028[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0034 0.38 12.2 1.5 2 21 13 32 13 33 0.94
2 25 0.053 5.8 8.5 3.7 1 23 44 67 44 67 0.95
3 25 1.6e-05 0.0017 19.6 2.8 1 23 73 95 73 95 0.93
4 25 0.00072 0.079 14.3 3.6 1 23 102 124 102 124 0.98
5 25 0.016 1.8 10.1 1.1 2 23 148 170 147 170 0.96
6 25 0.016 1.8 10.1 1.1 2 23 203 225 202 225 0.96
7 25 1.8e-05 0.002 19.3 0.1 2 21 346 365 345 366 0.94
8 25 1.8 2e+02 3.6 0.5 3 23 372 392 371 392 0.93
9 25 0.0025 0.28 12.6 1.9 1 23 397 420 397 420 0.97
10 25 0.00016 0.018 16.4 0.2 1 23 425 447 425 447 0.98
11 25 0.73 80 4.9 2.8 1 21 450 470 450 471 0.93
12 25 0.00017 0.019 16.3 1.1 1 23 484 507 484 507 0.95
13 25 9e-05 0.0099 17.2 1.1 1 23 513 535 513 535 0.98
14 25 4.1 4.6e+02 2.5 1.5 5 23 545 563 542 563 0.95
15 25 1.4 1.5e+02 4.0 0.6 1 23 569 592 569 592 0.89
16 25 2.2e-05 0.0024 19.1 1.5 2 21 720 739 719 740 0.93
17 25 0.19 21 6.7 0.2 3 23 747 768 746 768 0.96
18 25 0.44 48 5.6 0.4 3 23 775 796 774 796 0.96
19 25 4.9e-05 0.0054 18.0 0.5 2 23 802 823 801 823 0.97
20 25 3.4 3.7e+02 2.8 1.5 2 20 827 845 827 847 0.90
21 25 1.1e-05 0.0012 20.0 0.5 1 23 873 896 873 896 0.95
22 25 0.00051 0.056 14.8 0.4 1 23 902 924 902 924 0.95
23 25 0.082 9 7.8 0.2 1 23 930 952 930 952 0.97
24 25 0.0043 0.47 11.9 0.1 1 23 958 981 958 981 0.94
25 25 0.0025 0.27 12.6 0.5 2 23 988 1010 987 1010 0.95

Sequence Information

Coding Sequence
ATGGTCACACATTACGCAGCGATACACAATCCCAGGGTGTGCTCTGTTTGCAACAAAAAATTCATAAGTAAAGTGTGTTTTAGAAATCACTTGCAAATCTGTGGTGAATCCAAAGCTGGCGGCTCGAAGTTCATTTGCGACCATTGCTCGAAAGCGTACAATTGTAAAAGCGGTCTTCGATTACATATTCAGCTTAAGCATTTAATGGAGTATATTTATCAGTGTGAGCGGTGCGGCAAGAAGTTCAGTAATCCATATCACTTGCGGGAACATGACAATACCCACAACAGGGTGGAGGACAGATTTGTGTGTACTATTTGTTCAACAAAATACAGTACACGGAGAGGCTATCAACGTCACTATAAGAAACATTTTGACAAAAATGGTTTACCAACTGATTATAAATTCAGAAAGAAAATAAATAGAAAACCAGAATTGATGGAATGCTTTACATGTGATTACAAAACTGACGACAAGACAGCATTCAGGGAACATTTACGTCGCATGCATAACAATCAACGTCACTCTAAGAAACATTTTGACAAAAACGATTTACCAACTGATAATAAAATTCGAAAGAAAATAAATAGAACATCAGAATCGATGGAATGCTTTACATGTGATTACAAAACTGATGACAAGACAGCATTCAGGGAACATTTACGTCGCATGCATAACATATTATCGGTGGAGTTTGACGGGGGCTTACCACAAGGGCTGTGCCGAGCGTGCTCGGAGAGCGCCCTCGCTGCGGTAAACTTCAGACAGCTATGCTACGAGGCGTTCAACCAGTGGACTCAAGCCGTCAGCTTTATGGCAGATATTCAGCACCCGTCCGAGGAGGATAAAGTGTATTACATATTCTACAACGCTGAAGACAAGGCTGTGATAGGCGATCAGGCAGAAAGAGCCACCAAAAAAGAGATAGCGCTACTGCGTCTCAATTCTGGATTCCAGGACGAAGTAAAGGAAGAGCAGCCTTTGTTGATGCCAAAGCCCTTAGTCAAGAGGATACCTCGGTCAATGTGTTCATGGCAATGCCCCGATTGTGGCAAGAAATTTGCTGTTCCAGTCCACTTAAACTCCCATTTAAAAAACACAGCAAAAGTAGCTTGTAGTTTATGCGGTTTAGTTCTTACCAAAAAGAAATTCGCCCAGCATTTAGAAAAAACTCACGGCAAGATTGTGTTTTCTTGTGAAAATTGCCACCAATTGTTTGATGATCAAGTCTCCTTAAACTCGCACGTGAAAAAGTCGCACGACCGCGATTCCTACCAGTGCAAAGTTTGCGGGAACGGGTATACGAATGAAAGGGCTCTGAGCGCTCACATGTACTCGCACACACTTTTCTACTGTAGCCCTTGTGGCCAAAGCTTCGAGAACAGGAAATGCTACGTGTACCACCAAAAGCAGTGTAAAGTTGATATACCGACGCCCACTTCTAGCGAATATGTTTGCGATCATTGTGGTAACTCGTATACTAAGAAGCCATCACTCCGTATACATATAATACAGAAACACCTACACGTGTTACCTTACGTTTGCGACACTTGCGGGAAAAGAACGTCAACAATAGCTCACTTGAGGTCTCACGAGAAAGTGCATACCATTGAAAGGAAGACGTTCCAGTGTCATTGTGGGGCAAAATTACGTACAGAATTAGGTTTTCAGCTGCATCAACGTATTCATACCGGTGAGAGACCTTACGAGTGTGAGGAATGCGGCGACAAGTTCCTATCTTCGTCGCGGAGGTTGGATCATATTAAACGAAGACATAGGAGTACTAAAGACATGCCGCACGGATGTACAATGTGTTCCGCGCGCTTCGTCGAAGAAGAAAATCTCTGTCCAAAAGGTCTGTGTGTGCCTTGCACATCAGCTGCGCTAGCCGCACAAGAGTTCCGCGTATTCGTACGTACTTCGCAGAACTCCTGGAAAAGAGCCATCAGCGCCGTCAATGAAATACCAAAATCGTATGAAAAATCCGTCAAATCACTTTCTTCGTTTATAAAACCGGACAATTTTCAAACGCACACGATCAAAGATTACGTTGGTGGGGACTCTAAAACAATACTGAACAGGTTAAAACTGCGCTTGCTCAGAAATAACGTTGTAGAAGAAAGGAAACCGAGGATTGCCAGAGCTGGCCCGCCTTGTAGTTGCCCGGATTGCGGCAAATCTTTCTACAGCCCTTTTTATCTTCGAAGCCATTTAAAAAATAGCGGAGACAAAGAAGCATGTACCCACTGCGGCTCTGTCTACATCAGAGGTAAAGAAATCAAGGAACATCTCGCTACAGTACACAAAGAGACAACTGTACTTTGCAAATCTTGCCCTACCCTCTTCACAAGCGATATACGTCTGAAAAAACATATCGCAAAAGCACACAAAGCTGGAGCCTGGACTTGTTGCGATTGCGGTCGCAGTTTTCCCGGGAAAGCTTCCCTAGAAGTTCATAGACAGATGCATACGGTCAGGACTTGTCGCGCTTGTGGTAGCCAGTTCACTAACCGAGGCTGCTATAGGGAACACCGAGCTAAATGCGAGCCAGATGCTCTGCCGAACAAGAAGAATTTACCTCGCAACAAGCGCGCGAACCTTCGAGACCCGGCTACCTTCACCTGCGACTACTGCGGCAAGACTTACTTCTCCAGGCCGCAATTAAAGAACCATATAATATGGATTCACATGGATGTGAGGCCGCATCAGTGCCAGTGGTGTGGAAAACGGTTTTACACGCCAGCGCGCTTAGCGGAACACAGCATCGTGCATACACGAGAAAGGAAATTCTCGTGCGACATTTGCGGTGCGAAATTAGTTACCAAAATGGCGGCTATCTACCATAAACGCCGGCACACCGGCGAAAAGCCGTACGAGTGCGACGATTGTGGAGAAGCCTTTATATCTGCGTCGAGGAGGCTTGAGCATGCGAAGCGGAGACACGGAAAAGGACCTAAACTGCAGTGTATGCAATGTTCCGCCAGTTTTGTGAGGGGACAAGAATTAAAGAAACACATGGAAAAAATGCACAGAACCCAGGGAAACAACTTGGTGTCTAAACCTACAGTATTGACAAACAGTAGCTAG
Protein Sequence
MVTHYAAIHNPRVCSVCNKKFISKVCFRNHLQICGESKAGGSKFICDHCSKAYNCKSGLRLHIQLKHLMEYIYQCERCGKKFSNPYHLREHDNTHNRVEDRFVCTICSTKYSTRRGYQRHYKKHFDKNGLPTDYKFRKKINRKPELMECFTCDYKTDDKTAFREHLRRMHNNQRHSKKHFDKNDLPTDNKIRKKINRTSESMECFTCDYKTDDKTAFREHLRRMHNILSVEFDGGLPQGLCRACSESALAAVNFRQLCYEAFNQWTQAVSFMADIQHPSEEDKVYYIFYNAEDKAVIGDQAERATKKEIALLRLNSGFQDEVKEEQPLLMPKPLVKRIPRSMCSWQCPDCGKKFAVPVHLNSHLKNTAKVACSLCGLVLTKKKFAQHLEKTHGKIVFSCENCHQLFDDQVSLNSHVKKSHDRDSYQCKVCGNGYTNERALSAHMYSHTLFYCSPCGQSFENRKCYVYHQKQCKVDIPTPTSSEYVCDHCGNSYTKKPSLRIHIIQKHLHVLPYVCDTCGKRTSTIAHLRSHEKVHTIERKTFQCHCGAKLRTELGFQLHQRIHTGERPYECEECGDKFLSSSRRLDHIKRRHRSTKDMPHGCTMCSARFVEEENLCPKGLCVPCTSAALAAQEFRVFVRTSQNSWKRAISAVNEIPKSYEKSVKSLSSFIKPDNFQTHTIKDYVGGDSKTILNRLKLRLLRNNVVEERKPRIARAGPPCSCPDCGKSFYSPFYLRSHLKNSGDKEACTHCGSVYIRGKEIKEHLATVHKETTVLCKSCPTLFTSDIRLKKHIAKAHKAGAWTCCDCGRSFPGKASLEVHRQMHTVRTCRACGSQFTNRGCYREHRAKCEPDALPNKKNLPRNKRANLRDPATFTCDYCGKTYFSRPQLKNHIIWIHMDVRPHQCQWCGKRFYTPARLAEHSIVHTRERKFSCDICGAKLVTKMAAIYHKRRHTGEKPYECDDCGEAFISASRRLEHAKRRHGKGPKLQCMQCSASFVRGQELKKHMEKMHRTQGNNLVSKPTVLTNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-