Nnit033085.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:7367005-7390284[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.1 11 7.6 0.7 1 23 73 96 73 96 0.94 2 26 0.00019 0.021 16.1 0.3 2 23 125 147 124 147 0.95 3 26 0.0014 0.15 13.5 0.1 1 23 168 190 168 190 0.98 4 26 0.0038 0.42 12.1 1.1 1 23 194 216 194 216 0.97 5 26 0.0002 0.022 16.1 0.8 1 23 221 244 221 244 0.94 6 26 0.17 19 6.9 0.9 2 23 251 273 250 273 0.95 7 26 0.099 11 7.6 0.1 1 23 331 354 331 354 0.92 8 26 3.7e-05 0.0041 18.4 1.2 1 23 382 405 382 405 0.98 9 26 2.1e-05 0.0023 19.2 0.8 1 23 426 448 426 448 0.99 10 26 2.6e-05 0.0029 18.9 2.9 1 23 452 474 452 474 0.98 11 26 0.052 5.8 8.5 1.5 3 23 507 528 506 528 0.93 12 26 0.065 7.2 8.2 0.5 1 23 651 674 651 674 0.96 13 26 3.7 4e+02 2.7 0.4 2 23 699 721 698 721 0.91 14 26 0.42 46 5.6 0.1 1 23 745 767 745 767 0.96 15 26 0.00089 0.098 14.0 0.2 1 23 771 793 771 793 0.98 16 26 0.0013 0.14 13.5 0.8 1 23 798 821 798 821 0.96 17 26 0.095 10 7.7 0.4 1 23 969 991 969 991 0.96 18 26 0.02 2.2 9.8 0.8 2 23 1017 1038 1016 1038 0.96 19 26 2.6e-05 0.0029 18.9 0.1 1 23 1060 1082 1060 1082 0.98 20 26 9e-05 0.0099 17.2 0.3 1 23 1086 1108 1086 1108 0.98 21 26 9e-05 0.0099 17.2 0.4 1 23 1113 1136 1113 1136 0.96 22 26 7.5e-05 0.0083 17.4 0.5 2 23 1143 1165 1143 1165 0.97 23 26 0.00013 0.014 16.7 1.1 1 23 1172 1195 1172 1195 0.98 24 26 0.002 0.22 12.9 4.0 2 23 1202 1223 1201 1223 0.96 25 26 1.4e-06 0.00015 22.9 1.7 1 23 1229 1251 1229 1251 0.99 26 26 0.00016 0.018 16.4 0.2 2 23 1256 1277 1255 1277 0.96
Sequence Information
- Coding Sequence
- ATGTCAAATCATGTTTTCTTATTTTTAGATGATGAAGAGAAGGCGAACGAGACCAAAATAAATATAGGAACCAGAACGATCAAACTTATCAAAGTGAAGTCTGGCAGAGTTGTGAAAAAAGGCGACAATGTCAACATAATAGCCAATAGAAACAGCGCGGTAGCACTGATTGCTTACACCGGCAGCTCATGTCCCTTCAAACATTGGAACCAATTCTATATGTGCTTCTATTGCCGTGAGCGGTATACAGAATTCCCAAATTTATACCAGCATGTGAATGCAGTACATAACACGATTAATGAAATGATTATAAGAAACGCTTTTGCCAGAACCGAGAAAGATCAGAATATCAAAATTAATTTCATGGACTTAGTTTGCAAAATATGTGATGCAACCTTTGATAACTTTAAGAATTTGAAGATTCATCTGACGATGGATCACCAAAAACCAGTGGATGTAGATAATGATGGCGTATTACCGTACAAGATTTTGGATAACATCTTCGAGTGTCTACTGTGCGGAGTCGCCTATCAAAATTATACCGCATTGAATAAGCATATTAACTCGCATTTTCCTTACTTTGTTTGTAAAGATTGTGGTGTAGGATGCGCCACTTCTCAGCGCTTCAGACAGCATATGGCGAACCACGGCGAGCGGTTGCATGCCTGCGAAACCTGTCCCAAAACATTCCCAACTCTCTCCCGATTGAAAGAGCATATCACTCGGGTCCATTTGAAAGCTAAACAAAACAAATGCCTATTTTGTCCGGCATCTTTTACGAAATATTACGAGAAAGTGAAACATCTAAAGAATGTCCACGATGACGAAGGGAAGAAGAACGAGCTCAAAATAAGCCTAGGAATCAGCACCATCAAAACGATGACAACTGAAGTGGTGAAAACTGCCGAAATAATAGCCAATAGAAACAGCGCAGTTGCACTGATTGTCAACACTAGCGCGTCATGCCCCTTCAGATATGTGAACCAATTTTATGTATGTGTTTATTGCCAAGAACGGTATGAAGAATTCTCAAGTCTATACCAGCATGTGATTGCAGTACATCACAGTGTTAGTGAAACGATTGTGAGGGAGGCTCTCACCACAGTAGAGAAAGAACAAAAAATCAAAGTCAACTTCATGAATTTTACTTGCAAAATATGTAACGCATCGTTCAATGACTTTAAGGAGTTAAAGTTGCATTTAAAAACTGATCATAAAGAACCAGTGGATGTAGATAACGACGGCGTGTTGCCTTACAAGATTTTAGATAATATCTACGAGTGCTTATTGTGTGGTATCAACTTTCAAAATTATACGAACTTAAACAAGCACATCAAGACACATTCACCTTACTTTACTTGCAACCATTGTGGCAAAAGGTACACCACTTTGCGGGCTCTCAAAGTGCACACGGCGAAACACAAACACTTGCGTTCCCGTGAAAAATCCCACAAAACATGCCCAATTGTGAAAGTGAAGGATCAGAACAGCGACCGTCTCGAGAATAAGAAAAATAACTGTCCAATTTGTCAGGAAACTTTCGAACACAGTCACGAGATAGTGGAACATTTTAAGAATGTCCATGGATCCGACCAGATTATATCGACGGATATAACGCAGCCGAAACCGATCGTGCCGCTCTTTCAAGTCGAGTACGATCGCAGCCTCTGTAGGCCGCTGGGGACGATATCAGACTTCAGCAAAGTCTTAAATCGAAAGCAGAAGGCCAGAATCAGGATCGCAAGTAACTTAATGCCATTCACGCCGTCTAGAAGCCCTTCTCCTATTTCCATGGCAGCCAGATCCCCGACTCCGCTAAAGGAAATTTACTCGACACCTACTATACGCCCGGCGGTTAAATTGCTCCCGAAAAATCCAGATGTCAAACAGAATGCATTGACTCTCTTCGAGTTTTCAACCGTCTACCCTTTTGTTTATGGCAACAACAAGTTCAAATGTTTCGTATGCTCACAAGCTTTCTTGGAACTCTCTTTACTTAGGATGCACATGAATGAAACACACTTGTTTGCATCACTAAAACGATTGGTTAATAACAGAAGGGAAAACATTCTTAAAGTTGATGTTACTGATCTCACCTGCAAAATATGTGTGGCGACACAAAATAATTTAGTAGAATTAAAAACACATCTTAAATTTATGCACCAAAAACCTATAGACCCAGATTTGAAGGATAATATTATACCATTCAGGTTGGATCTCATTGATGGTGGATATAGATGTGTCATATGCGAGCAAAACTTTATAAAAGTCCGGATTTTAGTTATACATATGAGCGTTCACTTCAATAATTACAGCTGCGAGGTCTGTGGCTCAGGATTCATGACTTTAAGACTGCTGAAGAAGCATTTGGAAGTTCACGAAAATGGCAACTTCCCTTGCGACCGGTGCAGTAAAGTATTCAACACATCTTACAAAAGGAATCTCCATATCCGAGGCGTTCATATGAAACAGTTTCCACGACTCCTTCAACCAAGCAATTCGTCTATCACACTAAAAGATGAGGATGGAAGTGACATCACGTTAACTATGCTCGAAACGCCCATATCCCTTGATAGTCTAAAATGGGAGATTGAGGATAAGAAGAAGAAACCAAGAGGGCCACCGAGATTACTACCAAAAGGATCAGTTGAAAAGACTATCAAATTAAATACACCAATTAATTTTAATAATGTCACGATACTCAAAGAGCCTATATCGCTTGATGATTTTAATAAAACCACTGGAAATAAGGTTACTTTTAATGTTAAAACTGTTCAAGGCCCACTTTGTAAAGGTACTGTTCGAAAGAGAGCAAATGATACAGAATTACAATCGTGGAAACAGAATGCACTTATAATATTCGAGTATTCTAATGTTTATCCATTTATACATTCCGGGAACAAATACAAATGTTTTGTTTGTTCCAAACCATTTCTAGATGTCAATTTACTAAAAGATCATACTAATGGGCATAGTCCTAAAGATATGCAACGGGAATTGAATAATAGAATAAGAGATAATAACTTAAAGGTTGTTATTAATGATTTGCAATGTCGAATATGTGACAGTCGCCTTCAAAATTTAGAAAATCTGAAAAAACATTTGAAAGATCATGGCAAGAGTGTTGATTTGGAATTGCAAGATAATTTGATACCTTTTAAGCTAGGAGTGGGGTCTTTTGAATGCCAAATATGCGGAGAAGTTTTTGCAAAATTAAGATTACTTATAATTCACATGAGTAAACATTTTAATAATTACAGTTGCGAATTGTGTGGTTCTGTCTTTATATCTCTCAATTTGCTCAAAAGGCATCTGCAGTCGCACGAAACTGGCAGTTTTCCCTGCGACAAATGCGAGAAAGTCTTCAGCAACTCAGCTAAAAGAACATTACACATGCGGGGTGTTCATCTAAAACAGCATCCAAGACGATGTCCTATATGTCCAGAAAGATTCAATTCCAATTATCAAAGGACGAAGCATTTGAGGATAGTGCACAATCAGACGACCGCTCTCTTTCGGTGCGAAACCTGTGGGAGAGAATACGATTTGAAATATCACCTCTTAATTCATATTCGATCAGTGCACTTGCAAGAACGAAATCAGGAATGTCCTATATGTCACTCAAGATTTTTCTCAAAGTATTgtttgaccaggcatatggtcattcatacgggggagaagaattttaaatgcaacgtttgtaacaaagcgtatgcaagaaggaaaaatctgaaagaacattatagggttcatgacgtgggacttaattgctcagtatgtggccagCATTATGCTGACCAAGCATCTCTGATAGTTCATATGAATCTACATGGACTAGTGTAA
- Protein Sequence
- MSNHVFLFLDDEEKANETKINIGTRTIKLIKVKSGRVVKKGDNVNIIANRNSAVALIAYTGSSCPFKHWNQFYMCFYCRERYTEFPNLYQHVNAVHNTINEMIIRNAFARTEKDQNIKINFMDLVCKICDATFDNFKNLKIHLTMDHQKPVDVDNDGVLPYKILDNIFECLLCGVAYQNYTALNKHINSHFPYFVCKDCGVGCATSQRFRQHMANHGERLHACETCPKTFPTLSRLKEHITRVHLKAKQNKCLFCPASFTKYYEKVKHLKNVHDDEGKKNELKISLGISTIKTMTTEVVKTAEIIANRNSAVALIVNTSASCPFRYVNQFYVCVYCQERYEEFSSLYQHVIAVHHSVSETIVREALTTVEKEQKIKVNFMNFTCKICNASFNDFKELKLHLKTDHKEPVDVDNDGVLPYKILDNIYECLLCGINFQNYTNLNKHIKTHSPYFTCNHCGKRYTTLRALKVHTAKHKHLRSREKSHKTCPIVKVKDQNSDRLENKKNNCPICQETFEHSHEIVEHFKNVHGSDQIISTDITQPKPIVPLFQVEYDRSLCRPLGTISDFSKVLNRKQKARIRIASNLMPFTPSRSPSPISMAARSPTPLKEIYSTPTIRPAVKLLPKNPDVKQNALTLFEFSTVYPFVYGNNKFKCFVCSQAFLELSLLRMHMNETHLFASLKRLVNNRRENILKVDVTDLTCKICVATQNNLVELKTHLKFMHQKPIDPDLKDNIIPFRLDLIDGGYRCVICEQNFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHENGNFPCDRCSKVFNTSYKRNLHIRGVHMKQFPRLLQPSNSSITLKDEDGSDITLTMLETPISLDSLKWEIEDKKKKPRGPPRLLPKGSVEKTIKLNTPINFNNVTILKEPISLDDFNKTTGNKVTFNVKTVQGPLCKGTVRKRANDTELQSWKQNALIIFEYSNVYPFIHSGNKYKCFVCSKPFLDVNLLKDHTNGHSPKDMQRELNNRIRDNNLKVVINDLQCRICDSRLQNLENLKKHLKDHGKSVDLELQDNLIPFKLGVGSFECQICGEVFAKLRLLIIHMSKHFNNYSCELCGSVFISLNLLKRHLQSHETGSFPCDKCEKVFSNSAKRTLHMRGVHLKQHPRRCPICPERFNSNYQRTKHLRIVHNQTTALFRCETCGREYDLKYHLLIHIRSVHLQERNQECPICHSRFFSKYCLTRHMVIHTGEKNFKCNVCNKAYARRKNLKEHYRVHDVGLNCSVCGQHYADQASLIVHMNLHGLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -