Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.053 66 4.2 0.0 14 25 10 20 3 20 0.84

2 4 0.019 24 5.6 0.0 8 25 49 69 47 69 0.76

3 4 0.019 24 5.6 0.0 8 25 98 118 96 118 0.76

4 4 0.019 24 5.6 0.0 8 25 147 167 145 167 0.76

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.053	66	4.2	14	25	10	20	3	20	0.84
2	4	0.019	24	5.6	8	25	49	69	47	69	0.76
3	4	0.019	24	5.6	8	25	98	118	96	118	0.76
4	4	0.019	24	5.6	8	25	147	167	145	167	0.76

Coding Sequence: CTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTGGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTGGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTGGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAGTACACGCCGCGCTGCCCGCCTACTGCTGCACCCGCGCCACAGGTACTAG
Protein Sequence: LPAYCCTRATGTSTRRAARLLLHPRHRYWYTPRCPPTAAPAPQVLVHAALPAYCCTRATGTSTRRAARLLLHPRHRYWYTPRCPPTAAPAPQVLVHAALPAYCCTRATGTSTRRAARLLLHPRHRYWYTPRCPPTAAPAPQVLVHAALPAYCCTRATGTSTRRAARLLLHPRHRY

Sequence clustering based on sequence similarity using MMseqs2