Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374619.1:8294070-8296700[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1e-09 1.3e-06 28.9 0.0 1 41 17 57 17 59 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1e-09	1.3e-06	28.9	0.0	1	41	17	57	17	59	0.94

Sequence Information

Coding Sequence: atggaatcgaggcatcccaaaaataacagaaaaaagactgctgcgtacacagaagatGCGTTAAAAAAAGCTTTATCGGAGATCAGAGAAAAAAAAGTTCCTGTAAGAGAAGTATGTAGAAAATATGAAATACCCAAATCTACACTTCTGGATAGGATACATGGAAGAACGACGGATTGTATGAAAAGAAGAGGGCCAGATCCTATACTAGGAACAGGAGAGAAAACAGTGGTGCAGTGGCTGATAAACATCGCTAAATGTGGGTTCCCTGTTAAAAAACAAGAACTTTTGGATACTGTACAAAAGATTCTAAAAGATTCCTCTATACCTAACAAATTCAAAGATGATCGTCCAGGTCAAACCTGGTATTTGAATTTTTTAAAAAGGAATCCAGAAGTTTCTAGCCGATCGGCAGAAGGAATCAACAGAGCGAGAGCTCAAGTTAGCGAGGAGTCCGTCAGGAATTGGTTTAAAGGTCTCGAGTCGTTTTTGGATGAAATAAATCAAAAAGAAATTCTCAACCGGCCAGAgagtatttttaatggcgacgaaagtggcttttcgctttgcccaaagacgggtaaagtgctggggcccaggggataccgtaacctgtatcaagtgcaacaaggaagcgaaaaagataacttgactgtccttgtaacctttaatgctaacggagatgtctgtccgccatgcgtggtatttccctatgtgcgaccaccacgggcagtggtagaaagcatgccaccagattggtgtttgggcaagtctgaatcgggatggatgcgaggtgacgtctttttcgaatacgttaccaatgattttaacaactggctcgagcgcaataacatacaaaaacctgtcctgttgctcatagatgggcataaatctcatatgtctctcatgcttagtacagtgtgtgaacagatgcatataatattatatgctctaccgcctaacacgacacatatccttcagcccgctgatgtcagtgtatttgcccctctcaaggcaagctggaaaAGTACAGTACGTAAATTTTTAGCGAAGCCTGAAAACACTAATGCGACGATTACTAAAACAAACTTTTGCACATTGTTTGCAGAGACTTTGCAAGACACAAATATGCCAGCATGTATAAAAAACGGGTTTAAACGATGTGGACTCTACCCTTTCGATCCAAATGCGCCTGATTATACAAAATGTGTACTCGATACATTAGTAAATATAAACACCAGACAAATTTCTGCAGAAAAAAACATTACCAGAGCAGACGTAGCCACCACCAAAAAAGTACTCAAGCAAATAAAAACTGAGCTACTTAACAAAAACGTAAACTTTAGAGCAATAGCAAAAGAGCTTAACGTATTTAAAAAGACACTGCCTGTGGAGACCAACGTTTCGGAAGTAATAATAGACACGGAATCCGACTGCACGAATAGTACACTGCAACACATCTCTGCCGATGATCTACTGATGTTGTCAAACACAAGTAATGCTAATGTATCGAAGTCAGTGAACAAATCTGCAGAGACACAACAGATTCCACACAATCTAGAACTTGATGCTGGTATGGTTGAAATGTCATCGTTACACTTAACAGGAAGCTTTCTAGATGTTGGTTCAGTTGTTTCGCTTGATGACATTGTAATAATGCCTTTAAATATCACAGAAAAGACGTCAGAGCCGTTGAATGTTTGTAAAAAGGCATCATTGCCAAATCCAGCGGACGATCAGCTACGCCTACCAGATGCAAACAAAGATGACCGATCTTTATCTCTGGTTGATCCCTCTACTGTTGTTGACGTTAGAAAGGAGGTGATATCTTCTATTATATTAGCTGTACCCGAAAAACCTTATCATCCGTTACCTATTGTATCCTCTACTCCTATCCCAATGGAAGAGGAGGCTCAGTCGAACCCTGGAGACCCAAGGGTAAGTGAATTAGAAAAAAAGGATCAAAACGTCAACAATGAACCGCATGATACTCTAAGTTCGTGTAAAGTTCCTGAAAGACACTCACCGCCGAATATAATTGAAAGCACAATTTTAACATTTTGCAATGATGGTGGTGCACAAGCGCAAAAAAGAACCGATTCCAACGTAAAAGATCCGTTTGAGCGTCATTTATATTTACCAGACCAGTCTGTGAAATCCAAAAAAACAACAATTAATAAAACTCCTGCTGCTATTTCATCGGCAGCGTGGAGGGAGCATTACGAAATGCGAGAAAAATTTAAAAATTTAAAACAAGAAGAAATTAGAAAAAGGAAATTAGAACGTAGTGAAAAACAACAACAGGCAAAAATGTTAAAAGAAAGTAACTGCAAAGTAAAGGCAAAATCAAAAGTAAAAACTAGACGTGGGGACTCTCGAGACTTAGATTACCAGCCAAGAATTCTGCCACGTGTTAATAAAGAAAATTATGGTACTCCAACAGCTGCATCAGGAAAAATATCATGCTCAGAATGTTATGACGACTTAATTTCTGATGTAGATGAAGATGAAGATAAAAATATTGGATGTGATGTCTGTCCTCGGTGGTACCACCTTAAGTGCACAGTATTTCAAGGGCTGGCGTATTTAGATGTTAAAGATAAAACATACAAATGTGCCAAATGTGACTAA
Protein Sequence: MESRHPKNNRKKTAAYTEDALKKALSEIREKKVPVREVCRKYEIPKSTLLDRIHGRTTDCMKRRGPDPILGTGEKTVVQWLINIAKCGFPVKKQELLDTVQKILKDSSIPNKFKDDRPGQTWYLNFLKRNPEVSSRSAEGINRARAQVSEESVRNWFKGLESFLDEINQKEILNRPESIFNGDESGFSLCPKTGKVLGPRGYRNLYQVQQGSEKDNLTVLVTFNANGDVCPPCVVFPYVRPPRAVVESMPPDWCLGKSESGWMRGDVFFEYVTNDFNNWLERNNIQKPVLLLIDGHKSHMSLMLSTVCEQMHIILYALPPNTTHILQPADVSVFAPLKASWKSTVRKFLAKPENTNATITKTNFCTLFAETLQDTNMPACIKNGFKRCGLYPFDPNAPDYTKCVLDTLVNINTRQISAEKNITRADVATTKKVLKQIKTELLNKNVNFRAIAKELNVFKKTLPVETNVSEVIIDTESDCTNSTLQHISADDLLMLSNTSNANVSKSVNKSAETQQIPHNLELDAGMVEMSSLHLTGSFLDVGSVVSLDDIVIMPLNITEKTSEPLNVCKKASLPNPADDQLRLPDANKDDRSLSLVDPSTVVDVRKEVISSIILAVPEKPYHPLPIVSSTPIPMEEEAQSNPGDPRVSELEKKDQNVNNEPHDTLSSCKVPERHSPPNIIESTILTFCNDGGAQAQKRTDSNVKDPFERHLYLPDQSVKSKKTTINKTPAAISSAAWREHYEMREKFKNLKQEEIRKRKLERSEKQQQAKMLKESNCKVKAKSKVKTRRGDSRDLDYQPRILPRVNKENYGTPTAASGKISCSECYDDLISDVDEDEDKNIGCDVCPRWYHLKCTVFQGLAYLDVKDKTYKCAKCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -