Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR989991.1:2739862-2749198[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00069 0.063 14.4 2.6 1 21 186 206 186 207 0.95

2 11 0.19 17 6.7 0.4 2 23 243 262 242 262 0.89

3 11 6.6 6.1e+02 1.8 0.5 2 23 269 290 268 290 0.84

4 11 0.0021 0.2 12.8 2.7 3 23 327 347 326 347 0.98

5 11 0.025 2.3 9.4 2.3 1 23 353 375 353 375 0.95

6 11 2.4e-06 0.00022 22.1 0.4 1 23 381 404 381 404 0.97

7 11 0.00027 0.025 15.6 3.0 2 21 411 430 410 431 0.95

8 11 4.6e-05 0.0043 18.1 0.8 1 23 438 460 438 460 0.96

9 11 0.00024 0.022 15.8 1.1 1 23 466 488 466 488 0.98

10 11 1.4e-06 0.00013 22.9 1.6 1 23 494 516 494 516 0.97

11 11 0.0067 0.62 11.3 5.0 1 23 522 544 522 544 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00069	0.063	14.4	2.6	1	21	186	206	186	207	0.95
2	11	0.19	17	6.7	0.4	2	23	243	262	242	262	0.89
3	11	6.6	6.1e+02	1.8	0.5	2	23	269	290	268	290	0.84
4	11	0.0021	0.2	12.8	2.7	3	23	327	347	326	347	0.98
5	11	0.025	2.3	9.4	2.3	1	23	353	375	353	375	0.95
6	11	2.4e-06	0.00022	22.1	0.4	1	23	381	404	381	404	0.97
7	11	0.00027	0.025	15.6	3.0	2	21	411	430	410	431	0.95
8	11	4.6e-05	0.0043	18.1	0.8	1	23	438	460	438	460	0.96
9	11	0.00024	0.022	15.8	1.1	1	23	466	488	466	488	0.98
10	11	1.4e-06	0.00013	22.9	1.6	1	23	494	516	494	516	0.97
11	11	0.0067	0.62	11.3	5.0	1	23	522	544	522	544	0.95

Sequence Information

Coding Sequence: ATGTCGATTTCATTTGACCATAAGCCATTAACTTGTGCGAACTCATGTCGTATTTGCTTGGATAATAACTCAACCGGAGGAATAGATCTTACCAAAGACCAAAACGTACTACAGTCGTTTGAATATTGTGTTGGTATATCTATTAACATCCAATGTCCACCAAAAAGGTTATGTTTTAAGTGCGCAGATAATATAAATAATTATGTAAAATTTAAACAAAAGTGTCTAGAATCTGAAGAGCATTGGACATCATTATGTGAAGATGTTCAGAAGTGCAATGTATTAGTAAAAGAGGAGCTTATAAAATCTGAGGATACAGAAAATATATTTCATGAAGAGAAACACTTTACTGGACATGTTGAATATGACAATAAAAAAACTAAACCTAGTATTTCTCAACGTAATTGTGATGAAAGACTAGTTGAAAGTGATAATAATAATGACCAAAGAAAAAATGTTGAAAATTATATAAATGATGAAAAAGTAAATTTAGAAGTAAATGAAAACACATTTCATTTAAAAACTAATGATATTTTGAACAAATTTACAAAAAAGCATCAGTGTGAAAAATGTAAGAAGGAATACAAAAATCACAAATGGCTAGTGACACATATGATGAATATATGTTACAAAAACGACATTAAAAGTATAAATATAGAAGTCGATAAAAATAAAGCAACAAAATTAGAAGATTCTAAAACTAAGAAAAAACAAACGCCACCGTCTACTTGTGGTTTATGTAATACATCCTTTAGCAGCGACATCACGAAACACATGGACGAACATTGGTCAAACAATGATTTACAATGTCAATTATGCAATTATTTTGGCAGAGATTTTGCAGATATGGTAACACACAGTTTTCAACATTCTCCCAAAATGAAATTATTCTGTCATGCTTGTAAAAAGAAGAAGGCTTCGGTTCCATCTCTTCAGTTTCATTTCAGATCGGTACATTTACAAAAAGCGGGAGGTCTCTGTTCTGTATGCAATAAGACTTTTAAAAAATTCAATACATGGAGAAAACACGAACGGCTTCACAACGAAAATAGTTTGTTTATTTGCGATCACTGTGGGAGGAAATTTTTATACAAGAACGAAATCAAATCACATCTAATTTACCACACGGATGTGAGGCTATTCGTTTGCGAAACATGCGGCAAAGGTTTCAGGAGAATGTCCGGTTTAAAGGATCACATAAAAAATTTACACACCGTAATACATCCAGTGAAATGTCACCATTGCGACAAAACGTACAAAAGTCAGACGAAACTAGATCTTCATTTGAGGAACCTCGCTAAAGACAAACCATTCATATGTGGAGTTTGCTCCAAGACGTTTGTATCTCAGAAAGTATTAAAAAAACATATGTTCTGGCACACCGGCGAACGACCTCACACTTGTGCAGTTTGCGGATCGAGATATAAAGCCAAAGGGCAGTTGAATCTACACATGAGGAGCCACACGGGTTTTATGCCCCATAAATGTGTTGATTGCGGCAAAGGTTTTCCAACCTCGACGCAGTTGAGGCGACATCGAAGCGTTCACACGGGTGTCCGAGCGTATAAATGTGTGCACTGCGAGAGATCTTTTCATCAAAAGAAGACTTTGTTGGAACACGCAACGCAACACAAAAGCTCTCAGGGTGCAGAATTAGAAAACTAG
Protein Sequence: MSISFDHKPLTCANSCRICLDNNSTGGIDLTKDQNVLQSFEYCVGISINIQCPPKRLCFKCADNINNYVKFKQKCLESEEHWTSLCEDVQKCNVLVKEELIKSEDTENIFHEEKHFTGHVEYDNKKTKPSISQRNCDERLVESDNNNDQRKNVENYINDEKVNLEVNENTFHLKTNDILNKFTKKHQCEKCKKEYKNHKWLVTHMMNICYKNDIKSINIEVDKNKATKLEDSKTKKKQTPPSTCGLCNTSFSSDITKHMDEHWSNNDLQCQLCNYFGRDFADMVTHSFQHSPKMKLFCHACKKKKASVPSLQFHFRSVHLQKAGGLCSVCNKTFKKFNTWRKHERLHNENSLFICDHCGRKFLYKNEIKSHLIYHTDVRLFVCETCGKGFRRMSGLKDHIKNLHTVIHPVKCHHCDKTYKSQTKLDLHLRNLAKDKPFICGVCSKTFVSQKVLKKHMFWHTGERPHTCAVCGSRYKAKGQLNLHMRSHTGFMPHKCVDCGKGFPTSTQLRRHRSVHTGVRAYKCVHCERSFHQKKTLLEHATQHKSSQGAELEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080176;
90% Identity: -
80% Identity: -