Nurt022621.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR990006.1:5101351-5112548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.6e-06 0.00089 20.2 0.8 1 23 261 283 261 283 0.99 2 13 0.3 28 6.0 2.1 1 23 291 314 291 314 0.93 3 13 2 1.8e+02 3.5 0.5 1 23 318 341 318 341 0.85 4 13 0.00058 0.053 14.6 2.3 1 23 413 435 413 435 0.99 5 13 2.6 2.4e+02 3.1 1.9 2 23 444 466 443 466 0.95 6 13 0.17 15 6.9 3.0 1 23 470 492 470 492 0.98 7 13 8.5e-05 0.0079 17.2 2.8 1 23 497 520 497 520 0.98 8 13 0.25 23 6.3 1.0 3 22 526 545 525 547 0.79 9 13 0.26 24 6.3 0.0 2 19 566 583 565 586 0.91 10 13 0.061 5.6 8.2 0.3 2 23 625 647 624 647 0.90 11 13 1e-06 9.2e-05 23.3 1.4 1 23 656 678 656 678 0.98 12 13 0.00034 0.031 15.3 0.7 1 23 684 706 684 706 0.96 13 13 4.4e-06 0.00041 21.3 2.6 1 23 712 735 712 735 0.98
Sequence Information
- Coding Sequence
- ATGTTTGACTTAAAAGCTTGCACAGTGTGCTTGAAAAGTGATGTAAAAATCTTCAATATGAATATAGATCAGTTAAGAAACGAATATAATTTAGCATCTGGTTTAAAGACTCAAAGCCGTAATGGTTTACCCGAATATTTATGTTATCAGTGTGTTGCATATGTTAGAAATTTTAAAAAGTTTCGTGATAAATGCCAACGCACGTATTATGCATTGCAAGAAATATTATATAGAGATAAAGAGATAACCAAGTCAATAATTGCAGAATTAGATAGTAATGTACTAAATATTAAACCAACACTGTCATATCTCGCTCCAGACCACCTCAGAACCAGTTACGAAACTCTTAAATTCAAATGGGTTAAAAAGAATAGAATTGGTATAAAACATCAAGATAATATACCTGTTATACAATATACAACTACATCAGATGATTTTAGTTTCGAAATGCCAAGAAAAAAACCTAAACTCTTAACAGAATTGATAGAAGAATGTATTAAAGAAGAAGACAACACAATACCAAGCTATGAGGAGCCATTTGTACCTGAAAATGTAGTGTCAGAGCCCGAAAAAAATGATGAGAGTATCTTTGATAACAATTTTGATGATTGTGATGGAGAAGATAATGTTTATGATAATAACGATGAACAGCCTAAAGTAAATGATCAAACTGATGTTGATGGTATGAATTTAGAGGAAGAATACGCAACTATGGTGCCCATATCAATGAAGGAGGCTAAAGCTGTTGTTGATGTTTACAAAATGTTCGCACACGGCAAGTATCAGTGTGAAGTGTGTAAGAAGGCATATTATAATGAAAATCGACTGACAGCACACATGAGAATGCATGATATGCACACAAGTGGAACATTCTTCTGTGCCCTGTGCAGCTATTATTACAGAACTGATTTTCTTCTAAAAACCCACATGACTGAGAAACATATGTATAAATATTTATGTAAAAAGTGCCCTGAAGTTAGTTTTGACAGGACATCAGCCAAACAACATTTTATCTGGAGTCACTTACAGAAAGGTTCAAAGAAGGATGCCAGCTGGTATGAGACCCAACCAACGGGGGTTCCTAAAGATAGTAAAAAAAACAAATTGTTTATACGTCCTATAAGAAATACAAAGAAACTTCCTCAAGATTTTCCAGTCTACTCTCCAATAAGTCAGGAAGAACAATATGCTTTAGTGAAAGACCGACAGAAGACGAAAAACTATATAGATTCGCCGTATAGATGTGAATTTTGTTTTAAGGGCTTTAGAGAAGTGGCGACATTTGAAAAGCATATGAAGAAACATGATCCAGAATGTTCCGGAAAACTCCAGTGTGATGCATGCAAAATATATTGTCCGGACACAAGGAAGATGTACAAGCATATGAACATGAGCCATTTGTTTAAGTATTCCTGTCAAATGTGCAGCTATGTTTGCTTTAGCAGAGGTCAAGCTAAAATGCACTACAGATGGCATAAAAACGTAACATACTCGTGTCCGCATTGTAAAAAGGAATTTTCTAAAGCTTCCACAAGGCTGACTCACATACGTATAAAGCACCCTTCCATGAACATCTGCAACTTGTGTGGCCGTAGTTTCGTGAGCGTCACCGGCCTGTACTGTCACAAGAAACTAGCGCACAGTAAAGAGGAGGTGGAGGAGACCACAGTCGAAGTAGACACGTCTCACCCGCTGTACTGCGCCGAGTGCGGGATTCAGTTCCGGAACGAGATCGCCTTCGCGACGCACTTCGGCTCCTCCTACAAGCACGCCGATACCAATCTGTCCATCAAGCCGGTGGGCGGCGCGGGGCGCGGGCGGCCGCGCGCGGCGCACAGCGGCGTCGTCAACACCGGCGTGCCCACCTCCTCCACCTGCGAGATTTGCAACAAGTACTTGTCCAACGACTCGCAAGCGCGGCGACACTACGACGCGGAGCACCCCGGCGCGCACTACCTCAAGCGCTACATGTGCGACATCTGCGGACACACCACCCGGCAATACGCAAATCTGACGGTACACATGCGTACGCACACGTTGGAGAAGCCGTACGCGTGTCCGCACTGCGAGCGGCGCTTCAGCATGCCCAGCAATAGAGACCGCCATCTAGTTGTGCACACGGGCGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTGAAGCTGCACATCCAGACGGTGCACCTGAAGATCCCGTACGCGCCCTGGGACAAGAAGAACCGCAAGCGGCGCCGCGAGCCCGACCCTGCGCCCGCGCCGCCCGCGCCGCCCGCCGGGAACTACCTCAGCGCCTACATCACCTACAACGATGAGCGCCCCGCGCCCGCGCCGCCCGCCGGGAACTACCTCAGCGCCTACATCACCTACAACGAGTGA
- Protein Sequence
- MFDLKACTVCLKSDVKIFNMNIDQLRNEYNLASGLKTQSRNGLPEYLCYQCVAYVRNFKKFRDKCQRTYYALQEILYRDKEITKSIIAELDSNVLNIKPTLSYLAPDHLRTSYETLKFKWVKKNRIGIKHQDNIPVIQYTTTSDDFSFEMPRKKPKLLTELIEECIKEEDNTIPSYEEPFVPENVVSEPEKNDESIFDNNFDDCDGEDNVYDNNDEQPKVNDQTDVDGMNLEEEYATMVPISMKEAKAVVDVYKMFAHGKYQCEVCKKAYYNENRLTAHMRMHDMHTSGTFFCALCSYYYRTDFLLKTHMTEKHMYKYLCKKCPEVSFDRTSAKQHFIWSHLQKGSKKDASWYETQPTGVPKDSKKNKLFIRPIRNTKKLPQDFPVYSPISQEEQYALVKDRQKTKNYIDSPYRCEFCFKGFREVATFEKHMKKHDPECSGKLQCDACKIYCPDTRKMYKHMNMSHLFKYSCQMCSYVCFSRGQAKMHYRWHKNVTYSCPHCKKEFSKASTRLTHIRIKHPSMNICNLCGRSFVSVTGLYCHKKLAHSKEEVEETTVEVDTSHPLYCAECGIQFRNEIAFATHFGSSYKHADTNLSIKPVGGAGRGRPRAAHSGVVNTGVPTSSTCEICNKYLSNDSQARRHYDAEHPGAHYLKRYMCDICGHTTRQYANLTVHMRTHTLEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRREPDPAPAPPAPPAGNYLSAYITYNDERPAPAPPAGNYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079322;
- 90% Identity
- iTF_01080164;
- 80% Identity
- -