Nurt026213.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR990013.1:418999-420387[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0002 0.018 16.1 2.3 1 23 108 131 108 131 0.95 2 10 2.9e-05 0.0027 18.7 2.5 3 23 140 161 138 161 0.94 3 10 0.22 21 6.4 5.3 2 23 169 191 168 191 0.95 4 10 1.5e-05 0.0014 19.6 0.6 2 23 199 221 198 221 0.94 5 10 0.011 0.97 10.6 8.2 1 23 228 251 228 251 0.93 6 10 0.0015 0.14 13.3 5.3 1 23 257 280 257 280 0.94 7 10 5.6e-05 0.0052 17.8 0.3 2 23 288 309 287 309 0.97 8 10 0.001 0.097 13.8 2.2 2 23 317 339 316 339 0.96 9 10 7.4e-05 0.0069 17.4 3.0 2 23 346 368 345 368 0.94 10 10 3.6e-05 0.0034 18.4 3.9 1 23 378 400 378 400 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGCCGATGTTCCAACAACCTAAAATGGAAGATGTTTATCCAACAAAAATAGAAGGACACTTCCTTGATACCAAGTCCCAGGAAGAATACCCACCGGCTATGCCTGAAGACTATGCAATGCCTAAAGAAGAACTTGCATACCCACCTCCAAAGGTCGAAGATCAAATCATACCAAGACCAGGACCTATGCCAAATCGGCCCCCAACTAAGTTCATAAGTGTCACCAGCTCCGCATTAACCGAAGAACAAAGAGCTATGTATGAGTCGGTTCTATCAACTTGGAAACCAGTTATGTTTCCAAAACGAACTAAGCGATACATATGTCAGAAGTGCAATAAGGAATTCAAGAATTACCAAAATCTATACCTCCATACGACAAGGGTGCATTCATCGGAAGAGTCTGCGGTTATCTGTGACATATGCGATAAAACATTTAAGAATAAACACTATTTATACATGCATCGGATGAACAAACACTACTCTGACTCGGAGAAGTGCTATTGTCAGTTCTGTCTCCAAGAGTTCAGGACGAGGCGAGCACTGCACATGCACGTTAAACGTATACACCCAAACACGCTGCCAGAGATTAAGTGTCCGGAGTGTGGTAAGGAGTTCGCAGTGCCGTACAAGTTGAGATATCACATGGACAACTGCCACAGACCCGACAAAGACAAATATAAATGTCACATCTGTCAAAAGCTATACAAAAGTCACCTAAATCTGAACAGACACCTCCATTTCCAGCACTCGCAGGTGGAGAGACATCCGTGCGTGTTCTGCCCGATGACGTTCAAGTCTCGGCACCATATGAAACGTCACATCCTGAACATACACCCGCCGCTCGAGTCGAAAGTGACGTGTCCGGAGTGTTTGAAGGAGTTCAAGAACGACCAGTACTTAAAGGAGCATATGCAAGTTCACACTTCCTTCGAGAAGAAGGTGAAGTGTGATTTGTGCGATAAGTTCTTCCATTCGGCGGTACGTTTGAAGAAGCACAAGAAAATCGTGCATCCGAATAAGCCGAAGATACGCTGCGAGAAGTGCGACAAGGAGTTCGCGCACGCGCACTACCTCCGTCGCCATAATAACTCGGTTCACGTTGAAGTCGACGAGAGCAACTACCAACACGAATGCGATCAGTGCGGAAAGAAATTTAAGATTAAGAGATATTTGAATAACCACTTGCAGAGACATGAGCAACAGCACCTAAAACGCATATCGCAGATGGTGAAGACAGTCATGGACGACGGGGAAGCCCCACCAAAGACGGCGAAGAAACGGGGCAGGCCCCGAAGCGCGAGAAAGGAAATCGAGTTCATAAAATGCGAACCGGTTTCGAGTTCCGAATCCGAGTCCGGGGAAACGGATTCTGAATCAGAATAA
- Protein Sequence
- MEEPMFQQPKMEDVYPTKIEGHFLDTKSQEEYPPAMPEDYAMPKEELAYPPPKVEDQIIPRPGPMPNRPPTKFISVTSSALTEEQRAMYESVLSTWKPVMFPKRTKRYICQKCNKEFKNYQNLYLHTTRVHSSEESAVICDICDKTFKNKHYLYMHRMNKHYSDSEKCYCQFCLQEFRTRRALHMHVKRIHPNTLPEIKCPECGKEFAVPYKLRYHMDNCHRPDKDKYKCHICQKLYKSHLNLNRHLHFQHSQVERHPCVFCPMTFKSRHHMKRHILNIHPPLESKVTCPECLKEFKNDQYLKEHMQVHTSFEKKVKCDLCDKFFHSAVRLKKHKKIVHPNKPKIRCEKCDKEFAHAHYLRRHNNSVHVEVDESNYQHECDQCGKKFKIKRYLNNHLQRHEQQHLKRISQMVKTVMDDGEAPPKTAKKRGRPRSARKEIEFIKCEPVSSSESESGETDSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265142;
- 90% Identity
- iTF_01079319;
- 80% Identity
- -