Nurt010996.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR989998.1:1824877-1834518[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.16 13.1 1.6 1 23 295 317 295 317 0.98 2 12 0.047 4.4 8.6 2.5 2 23 325 346 324 346 0.93 3 12 0.72 66 4.9 0.6 1 23 350 372 350 372 0.96 4 12 0.00051 0.047 14.8 2.2 1 23 377 400 377 400 0.98 5 12 0.002 0.18 12.9 0.1 1 23 404 427 404 427 0.94 6 12 0.0034 0.31 12.2 0.2 2 21 445 464 445 469 0.92 7 12 9.3e-05 0.0086 17.1 0.4 3 23 479 500 479 500 0.98 8 12 0.18 17 6.7 0.6 2 23 521 543 521 543 0.97 9 12 3.5e-05 0.0032 18.4 0.3 1 23 554 576 554 576 0.98 10 12 1.7e-06 0.00016 22.6 1.4 1 23 582 604 582 604 0.99 11 12 0.00028 0.026 15.6 1.8 1 23 610 632 610 632 0.97 12 12 3.4e-05 0.0032 18.5 0.1 1 23 638 661 638 661 0.97
Sequence Information
- Coding Sequence
- ATGGAGGATATAAAAGTATGCAGAATATGTCTTTTAATGGATGTAAAAATGTATAATTTACAATCCTACTCATTGGAAACTTATTACGAAGTTTTAGTAGGTAGTAATACTGAAATTGTAGACCTGCCAAAATATATATGCTATGAATGTACTGCACAATTAAAAAAGTTTTATTTATTTCGGGAGAGATGTTTGCGAGGGCAAGCGACATTAATAGGCTTATTGCACTCATGTGAAAAGATTACTAGTGACGTTATAAAGAACATCGACAAAGATGTTTTCCGTTTGTCTTCAAATATAACATTTAGCCAAGTAAAGTGCATGAATATAACATCCGATGCAGATATAATCATAAATAATGAAATTAAAACGGAACCATTTGAAGTTGTTGATGATGGAGATTATTTTGATGACAAAGATAACATTAAGAGAGAAAACAGCTGTGACGATCTATCTTTACTATCAAGTGTTGATAAAGGACTATCGAGTGATGATGATGAACCGCTATCTTTACATAAAGAGAAAAAAAAAGAAATGAAAATGAAAAGAAGAAAAAAGCATGACATAGAAAAAGCAATTAAAATCGATACTGACAATGTGTCAGAAAAATCGGAGACAGAGACAACCAACGCTAATAATGTATCTCAAGATAGTGTTATGATGGAAGTCAAACCAAAGCGTGGGAGGCCCAGGAAGACCGAACAAAAAACTTTTAAAATAAGAACAACAGGAACTAAGCAACGGCGCACCAACAACACTGGAGGTGTTGTTGAAGAGGACTTTGATCTGGAGAACTATTGTGATATTATTACACTAACGGTCGAACAACAAAAGGAGGAGATCAAACAACGTCAGAGTTCGTCGAATTATCTGAACGCGATATTCCAGTGCAAGTTGTGTTTCAAGGGTTTCATCGACGCGCAGGCGTGGAAGCACCACGTCAGCAAACATGAGCCGAGTGCAGGCGACTTGGAGTGCCAGATCTGCAAGTTCAGATTCAAAACGAAGCGAATACTCCAGAAGCACAGTTCGAACCACGAGAAGAAATACGCGTGCAAGTCTTGTACGTACGTGTCTAAATCTGGGACTCAAGCAAGACAACATCAGATGTGGCATAAAGGTGTCACGTACAAATGCCAACACTGCGATGAAGTATTGACTAAATGGACGTCGTACTTGTCGCACGTGCGCATGAAGCACCCGTCGGAGTTCATCTGCGGGGTGTGCGGGTACTCCTTCGTCAGCAAGCTGGGCCTCGCCATGCACAAGACCATGATGCACAAGGCCACTGTCGAAAAAGAAAAAACGAAGGATGAAAAGGACGACATGCCGTACTGCCCGCAGTGCGACGTGAAGTTCGTGTCGATGGAGGCGTACAAGCGGCACATGGTCACGTCGGTCAAGCACACGCAGAGCACTGACTTCAACTCGGGCTGCCGCGTGTGCGGCGAGTCGTTCCCGGACGCGGAGGCGCTGCGCGTGCACCACCGGCGGCAGCACGCGCGCGCGCGCCCGCGCAACTACGGCAAGGGCCGCCCCGCGCGCGCGCACTGGCCGGCGCGCTGCGACCACTGCTCGGAGGAGATCCCGAACGCGCGCGAGTACTGGAACCACTTTCGACGCGTTCATCCCGACAAGAACTATCCCGTCCAAAAGGATTACATTTGTGACATCTGCGGAAAAGGCTTTCGGGGTAATGCATTCCTTGTGTACCATAAGAGAACCCACTTCGAAGAGCGAGCCTTTAAGTGTCCCCAGTGCCCAAAGGCATTCTTCAACCGGACAAACTTACAAATGCACGAGAAGACGCATTCGGAGCATCGTCCGCACCCGTGCTCCATGTGTTCGAAGGCTTTCAAGATGAAAGGTGCATTGGACAGGCATTTCAGGAGCCACACGGGGGTGAAGCCATACGCGTGCGAAGTGTGCGGGAAAGCTTTCGCGCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTCAAGCAGCCCTCGCCCTACGTCAGCCGCGCGCGCCTCGAGCGCCGCAGCAAGCCGCGCGACCCGCCCGCCGCGCAGTTCCTCTACTAG
- Protein Sequence
- MEDIKVCRICLLMDVKMYNLQSYSLETYYEVLVGSNTEIVDLPKYICYECTAQLKKFYLFRERCLRGQATLIGLLHSCEKITSDVIKNIDKDVFRLSSNITFSQVKCMNITSDADIIINNEIKTEPFEVVDDGDYFDDKDNIKRENSCDDLSLLSSVDKGLSSDDDEPLSLHKEKKKEMKMKRRKKHDIEKAIKIDTDNVSEKSETETTNANNVSQDSVMMEVKPKRGRPRKTEQKTFKIRTTGTKQRRTNNTGGVVEEDFDLENYCDIITLTVEQQKEEIKQRQSSSNYLNAIFQCKLCFKGFIDAQAWKHHVSKHEPSAGDLECQICKFRFKTKRILQKHSSNHEKKYACKSCTYVSKSGTQARQHQMWHKGVTYKCQHCDEVLTKWTSYLSHVRMKHPSEFICGVCGYSFVSKLGLAMHKTMMHKATVEKEKTKDEKDDMPYCPQCDVKFVSMEAYKRHMVTSVKHTQSTDFNSGCRVCGESFPDAEALRVHHRRQHARARPRNYGKGRPARAHWPARCDHCSEEIPNAREYWNHFRRVHPDKNYPVQKDYICDICGKGFRGNAFLVYHKRTHFEERAFKCPQCPKAFFNRTNLQMHEKTHSEHRPHPCSMCSKAFKMKGALDRHFRSHTGVKPYACEVCGKAFAQSNSRKLHVRTVHLKQPSPYVSRARLERRSKPRDPPAAQFLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506602;
- 90% Identity
- -
- 80% Identity
- -