Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR990009.1:3249596-3250684[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.073 6.8 8.0 1.4 1 20 33 52 33 56 0.86

2 9 0.00016 0.015 16.4 1.3 1 23 129 151 129 151 0.98

3 9 0.0058 0.53 11.5 0.2 1 23 155 177 155 177 0.95

4 9 0.00059 0.054 14.6 0.2 1 23 182 205 182 205 0.94

5 9 5e-05 0.0046 17.9 2.9 1 23 211 234 211 234 0.97

6 9 4.4e-05 0.004 18.1 0.2 1 23 241 264 241 264 0.98

7 9 6.2e-06 0.00058 20.8 0.9 1 23 270 292 270 292 0.96

8 9 7.6e-08 7e-06 26.8 1.3 1 23 298 320 298 320 0.99

9 9 4.1e-05 0.0038 18.2 2.9 1 23 326 349 326 349 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.073	6.8	8.0	1.4	1	20	33	52	33	56	0.86
2	9	0.00016	0.015	16.4	1.3	1	23	129	151	129	151	0.98
3	9	0.0058	0.53	11.5	0.2	1	23	155	177	155	177	0.95
4	9	0.00059	0.054	14.6	0.2	1	23	182	205	182	205	0.94
5	9	5e-05	0.0046	17.9	2.9	1	23	211	234	211	234	0.97
6	9	4.4e-05	0.004	18.1	0.2	1	23	241	264	241	264	0.98
7	9	6.2e-06	0.00058	20.8	0.9	1	23	270	292	270	292	0.96
8	9	7.6e-08	7e-06	26.8	1.3	1	23	298	320	298	320	0.99
9	9	4.1e-05	0.0038	18.2	2.9	1	23	326	349	326	349	0.97

Sequence Information

Coding Sequence: ATGAAAGATGCAGACGCAATAAAGGCAAAGAAGAAGAATGCGAGTATTTTGTTAGAGAACACGAGGATTTGCCCGTTTAGATGGATGAAGAATTTGTATTTGTGTTTTTATTGCGACCAACAATTTACTGATCCAGCCATTCTGAGGCATCATAATAGTTTCGACCACAGTTCACAATCGTTGATGCAAATAAAAACGGCATTATCTAGACTGAAAAAGCATGAATTAGTTAAAGCAGACGTATCAGATTTGAGTTGTAAACTATGTGTTACGCAAATAAATAATTTCGACGATATAAAAATACATTTAATCGATAAACATGGCGCAAACTTAGATATAAACTCGCAGGATGGTGTTCTGCCATTTAGAATTAGTAAGAATAACTTTCCGTGTGCCATTTGTGAGGAAAAATTCGACGAGTTCAAAACTCTTAACCATCACATGAATACACATTATCAAAATTTTATTTGCGAACAATGTGGCTCAGGCTTTATGACGCCAGATCGCTTGCGGACTCACGCTTTCTCTCACGAAACGGGAGCCTTTGCATGTGAAATTTGCGATAAGGTATTTCGATCTATGAATGCGAAAAATGAGCACTATGCTACGGTACATAAGAAGGTGAAACGTCATCGGTGCCCGTACTGTCCTGAGACATTTCGAAATTACTTTCAAAGAAACAAACATATTTCAACGATACACGGTATGAAATTAAAGGAATTTAAATGTTCGCTGTGCCCGAAAGTGTTTACGTCGAGCGGGAAAATTGGTGTGCATGTGCGAACAGTGCACTTAAAAATGAAAAGACACGCTTGTGACGTGTGCGAATGGAAATTTTATTCGAAATCAGAATTAAAGGAACACATGATTCGGCATGGTGGTGAAAGAAAATTTCAATGTAATATTTGCAAGAAAGCCTACGCAAGAAAATATACTCTGAGAGAACATATGAGGATACACGAAAATGATAGGCGATTCGTTTGCACCATTTGTGGTGGATCGTTTGTTCAGAAATGCAGCTTAAAGCATCATGTCAAAGTTAATCATCCATCGGTTAAGACGAATGAATTCCAAAATTTGGTGTCATGA
Protein Sequence: MKDADAIKAKKKNASILLENTRICPFRWMKNLYLCFYCDQQFTDPAILRHHNSFDHSSQSLMQIKTALSRLKKHELVKADVSDLSCKLCVTQINNFDDIKIHLIDKHGANLDINSQDGVLPFRISKNNFPCAICEEKFDEFKTLNHHMNTHYQNFICEQCGSGFMTPDRLRTHAFSHETGAFACEICDKVFRSMNAKNEHYATVHKKVKRHRCPYCPETFRNYFQRNKHISTIHGMKLKEFKCSLCPKVFTSSGKIGVHVRTVHLKMKRHACDVCEWKFYSKSELKEHMIRHGGERKFQCNICKKAYARKYTLREHMRIHENDRRFVCTICGGSFVQKCSLKHHVKVNHPSVKTNEFQNLVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078436;
90% Identity: iTF_00843765;
80% Identity: -