Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR990002.1:11567932-11572484[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.39 36 5.7 1.9 1 23 210 232 210 232 0.96

2 14 7.1 6.5e+02 1.7 0.8 6 23 244 262 244 262 0.93

3 14 1.7e-07 1.6e-05 25.7 1.3 2 23 317 338 317 338 0.97

4 14 0.00046 0.042 14.9 1.4 1 23 347 370 347 370 0.93

5 14 0.026 2.4 9.4 0.1 1 23 376 398 376 398 0.94

6 14 3.7e-05 0.0034 18.4 1.3 1 23 404 426 404 426 0.98

7 14 0.00092 0.085 14.0 6.8 1 23 432 454 432 454 0.98

8 14 1.1 1e+02 4.3 3.1 1 23 578 600 578 600 0.95

9 14 0.00045 0.041 14.9 2.0 2 23 607 629 606 629 0.92

10 14 7.3e-07 6.7e-05 23.7 0.4 1 23 635 657 635 657 0.98

11 14 2.6e-07 2.4e-05 25.1 3.4 1 23 663 685 663 685 0.98

12 14 0.0022 0.2 12.8 2.5 1 23 691 713 691 713 0.96

13 14 1.4e-05 0.0013 19.6 2.0 1 23 719 741 719 741 0.96

14 14 0.022 2 9.6 4.7 1 23 747 770 747 770 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.39	36	5.7	1.9	1	23	210	232	210	232	0.96
2	14	7.1	6.5e+02	1.7	0.8	6	23	244	262	244	262	0.93
3	14	1.7e-07	1.6e-05	25.7	1.3	2	23	317	338	317	338	0.97
4	14	0.00046	0.042	14.9	1.4	1	23	347	370	347	370	0.93
5	14	0.026	2.4	9.4	0.1	1	23	376	398	376	398	0.94
6	14	3.7e-05	0.0034	18.4	1.3	1	23	404	426	404	426	0.98
7	14	0.00092	0.085	14.0	6.8	1	23	432	454	432	454	0.98
8	14	1.1	1e+02	4.3	3.1	1	23	578	600	578	600	0.95
9	14	0.00045	0.041	14.9	2.0	2	23	607	629	606	629	0.92
10	14	7.3e-07	6.7e-05	23.7	0.4	1	23	635	657	635	657	0.98
11	14	2.6e-07	2.4e-05	25.1	3.4	1	23	663	685	663	685	0.98
12	14	0.0022	0.2	12.8	2.5	1	23	691	713	691	713	0.96
13	14	1.4e-05	0.0013	19.6	2.0	1	23	719	741	719	741	0.96
14	14	0.022	2	9.6	4.7	1	23	747	770	747	770	0.89

Sequence Information

Coding Sequence: ATGTATGACTTTTCAAAGATTTGTCGTATTTGCGGCGCTAACAATCGCCCCGTTTTCTCATTGTTTGGGGAAGATGCACAGCGAAATCAACTTGTTCAGAAGATAAATCAATATTTACCCATAGAGGTGCACCAACAAGATGCTTATCCTCTTGGAATATGTGCTTCATGTGCTGATTCAGTGTTGAAGTGGCATGAACTGGCACAGCGCTGCATAAAAACTGATAAAGCCCTAACTTTGAAGCTGCATGCAAGTAGACAGCCCAGCAATAACATCCAACAAGGAAGTTCTGGGTCGTCCGCTACATGTGGAGAGGTTCATGGCAGGTTTTCAGCTCCTTTAATGTTAATAATAAAAGAAGTTTTGAACAATGTTTACTTCAAGATATTGAATATCGATGAAGAAAACTCAGATATTATATATGTCTGTCAGATATGCCCGGACAAACCTGCTTCAACATCAATAGGCTCTCTGTGTTATCATCTGACAACACATCACAACCATGAACTAAACGACAAGAGATCAGTCGAAGCTTTCATAAAAGAAAACATAACATTTGAAGAAGTTCTAACAAATGATTGTGTGACCGATGACGAGTCGGAGAGGCAGATTGCTGAAATACCAAATTACTTTTGCCCTTTTTGCGAAAGCGCGTTTTCATCGCCGACTCGCCTCATATGTCATCTGAACAAACACATAGAAGTGAGCATCGATGATGGCGTTCTTTGTTGTGACCATCTGTTCGCTGATAAGAAATCTTTCGTTTCACATTTGCAAGATAAACATGTAAACAGATCAACAGAGGGTGCCCTAATATGCAAAACTTGCGGCTCAGTCGAAAACGATCTTGAGGCCTTGGCCGTCCACGTAAACGAGAAACATGCCGAAGTTGAAGAACAAAAGAAGAAGATAGAACCGAATCTAAAATGCCAGAAGTTCATACCGGCCGTGTGCCCCGAATGCAACAAATCGTTCTCTAATAAATACAACATGCTAACTCATATGAAAACCCATACAAGTGGACTCGCCGCTGGTAAATTTATGTGCATCAAATGTAACAAGACTTACAAGAGCCGCGGCAGCTTGACATACCACCAGCGGGTGGCCCACGAGGGGTTGCTTCGGTTTCTGTGCTCTATGTGTGGAGAAGCGTTTCCATCGCGTACGGCCAGAGACACACACGCACGCATCCATACAGGATCGAAGCCGTTCACTTGCGATTACTGCAACAAGTCTTATCGAGCACAGAACACCTTAAGCCGACACATAGACATGCATCTAAATATACGGAAGTATGACTGTCATCTGTGCCCAAAGAAGTTCCGGAAGAGAACCCACCTCGACTACCATTTAAAAACACACGAAAGAAAGAAGTTTAGCGAACAGAGAATAAAGGAACACGACTCGGACGAGTCCGGCCGCGCCGATGGCCTCGCCTCGGATGACGACCAGCCTCTCGCTTCCATAGCGACTAAAACCAAAATAGATCTTTACCAAAAATTTTATACCGCCCTTATAAACTTTAGGGATCATTTCACGAAGGAACACGATGGTCACAGCAGTTCGGACTTCTCAGATTCTAGCACATCTGATAACGAGGAAGCGGCCACACAGGAAAGCTTAAACAGCTTCGATGACTTGACGCACAGCAACATGAGGAAAGACAAGATGGACGAGGAGGCGCGACTCGAACTCAGTCAAGTGCAAACGAAAATAAACGGAAAAGTGTATTTTACGTGCGCGACGTGCGGGAAGAACCTCAGCTCGACACACACTTACATATTCCATAAACGCATCCACACCGGAGAGCGGCCGTGCGTGTGTCACGTATGCGGGAAGCAGTTCCGCGCGCCGAACGGGCTCCAGAGACACCTGACGGAAACTCACGAGAAGCAGCGCCGGTACATCTGCGTCATGTGTCCTAAAAACTTCGCCAACTCGCAAAACCTCAAACAACACATGAGGATCCACACGGGCGAGCGACCCTTCGTCTGCCCGCACTGCGGCAAGCGCTTCACGCAGAGCGGCTCGCTGCACGTCCACCTGAAGACTCACAGCGAGCACTACCCGCACCACTGCGCCGAGTGCGGCGCCAAGTTCCGCCTGCGCTCCGGCCTCGCCAGGCACCGCCTCAAGCACACCGGGGAGCGCCCGCACGCCTGCGCGCTCTGCGGGAAGGCCTTTCGCCAGAAACACGAGCTCAACAGCCACGTGCTCACGCACAGCGACACCAAGCCCCACGCCTGCGCCGTCTGCGGCACGGCCTTCCGCCAGCGGCGGGCTCTGCGGCACCACTGCAAGCGGCTGCACGAAACCGAGCCCGGGGACCCGGCGCCCGCGGTCTACGGCCACGGGGGGCACTACGACGCGGTAAGTAACTCGGAACGGGAGGAAACCGCGGAGCCGGAGGAAGATCGGGTGGACACCGTCATAGAGAGGCCGAAGGCGATAGTGATCGAGGACGGCAGGCGCTACGGCGAGTGCGGCGTGTGCGGCCGCCTTCGCCGACGCCGCCAACCTGGCGCGCCACCTGCGCCGCCGCCTGCGCGCGCACGCCGCCCGCTGAGCCCGCAACGCTTCGCGCGCGCGGCGCACCGGCGCGACCACGTGTTCGCGTGCGGGAAGACGTTCCGCCTGCGCGTCGCCACGCCGCCGCCGTGCGCTGACCGCCCGCTCTGTTGCAGGTGCGACCGCGACGACCTCGACGGCGAGATGGCGGGCCTGGCGACCCACTCGCTGGCGCGCCACACCAGGTATCGGATCCAGTGCGATGTGGGCAAGAAGTTGGTGGGAATGTACGATTACATCTGGCACGTTCATCGCCACGCTATTATAAAATTAAAAGCGATAGAGCTCACTGCCATCAAATTTCCAAAGAGCTCAACGTTCTACAGCGGCGAGCACCAATGTATCGCTACATTGCGCACATGCGATTCGCGTCCAATTCGCTTACGGTACGAATTGGAATTCACGGATAATGTTAAGGTTTTGATAGGCCCCAATGAGCAGATTTGCAATTGTACCAAACGAGCCACAGCTGCCACAGATAATAACAGACGACCGGAAACAATACGACACGACAACCACGAAAGTAACGTAGGACAAGTCGCCTCCGAAGGCAATCGCCCCGCCCCCGAACGGGCGGCTGGCGGGCAACCCCCGCGCGCGGCGCCCTCGCACGCGCACGCGGGTCGGCTCGCATCGCCGCATTGCGTAACGCGTAACTTTTACATTTCTTAG
Protein Sequence: MYDFSKICRICGANNRPVFSLFGEDAQRNQLVQKINQYLPIEVHQQDAYPLGICASCADSVLKWHELAQRCIKTDKALTLKLHASRQPSNNIQQGSSGSSATCGEVHGRFSAPLMLIIKEVLNNVYFKILNIDEENSDIIYVCQICPDKPASTSIGSLCYHLTTHHNHELNDKRSVEAFIKENITFEEVLTNDCVTDDESERQIAEIPNYFCPFCESAFSSPTRLICHLNKHIEVSIDDGVLCCDHLFADKKSFVSHLQDKHVNRSTEGALICKTCGSVENDLEALAVHVNEKHAEVEEQKKKIEPNLKCQKFIPAVCPECNKSFSNKYNMLTHMKTHTSGLAAGKFMCIKCNKTYKSRGSLTYHQRVAHEGLLRFLCSMCGEAFPSRTARDTHARIHTGSKPFTCDYCNKSYRAQNTLSRHIDMHLNIRKYDCHLCPKKFRKRTHLDYHLKTHERKKFSEQRIKEHDSDESGRADGLASDDDQPLASIATKTKIDLYQKFYTALINFRDHFTKEHDGHSSSDFSDSSTSDNEEAATQESLNSFDDLTHSNMRKDKMDEEARLELSQVQTKINGKVYFTCATCGKNLSSTHTYIFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHEKQRRYICVMCPKNFANSQNLKQHMRIHTGERPFVCPHCGKRFTQSGSLHVHLKTHSEHYPHHCAECGAKFRLRSGLARHRLKHTGERPHACALCGKAFRQKHELNSHVLTHSDTKPHACAVCGTAFRQRRALRHHCKRLHETEPGDPAPAVYGHGGHYDAVSNSEREETAEPEEDRVDTVIERPKAIVIEDGRRYGECGVCGRLRRRRQPGAPPAPPPARARRPLSPQRFARAAHRRDHVFACGKTFRLRVATPPPCADRPLCCRCDRDDLDGEMAGLATHSLARHTRYRIQCDVGKKLVGMYDYIWHVHRHAIIKLKAIELTAIKFPKSSTFYSGEHQCIATLRTCDSRPIRLRYELEFTDNVKVLIGPNEQICNCTKRATAATDNNRRPETIRHDNHESNVGQVASEGNRPAPERAAGGQPPRAAPSHAHAGRLASPHCVTRNFYIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -