Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR989993.1:3109280-3118855[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00022 0.021 15.9 3.4 1 23 239 261 239 261 0.98

2 10 0.00015 0.014 16.5 6.6 1 23 267 289 267 289 0.96

3 10 0.0014 0.13 13.4 6.9 1 23 295 317 295 317 0.98

4 10 0.00059 0.055 14.6 1.0 1 23 323 345 323 345 0.97

5 10 5.3e-06 0.00049 21.0 1.0 1 23 351 373 351 373 0.97

6 10 3.9e-06 0.00036 21.4 0.0 1 23 379 401 379 401 0.98

7 10 4.6e-05 0.0043 18.0 0.4 1 23 406 428 406 428 0.96

8 10 1.8e-05 0.0017 19.3 0.5 1 23 450 472 450 472 0.98

9 10 0.001 0.096 13.8 3.3 1 23 538 560 538 560 0.96

10 10 2.4e-05 0.0023 18.9 4.3 1 23 570 592 570 592 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00022	0.021	15.9	3.4	1	23	239	261	239	261	0.98
2	10	0.00015	0.014	16.5	6.6	1	23	267	289	267	289	0.96
3	10	0.0014	0.13	13.4	6.9	1	23	295	317	295	317	0.98
4	10	0.00059	0.055	14.6	1.0	1	23	323	345	323	345	0.97
5	10	5.3e-06	0.00049	21.0	1.0	1	23	351	373	351	373	0.97
6	10	3.9e-06	0.00036	21.4	0.0	1	23	379	401	379	401	0.98
7	10	4.6e-05	0.0043	18.0	0.4	1	23	406	428	406	428	0.96
8	10	1.8e-05	0.0017	19.3	0.5	1	23	450	472	450	472	0.98
9	10	0.001	0.096	13.8	3.3	1	23	538	560	538	560	0.96
10	10	2.4e-05	0.0023	18.9	4.3	1	23	570	592	570	592	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACGCCGAATAATGTCTCGGGCTTCGGTTATTCGTGGGGCTTTACAAGCACCGCAGATCTTACCAAGTGTGAGGTGGAAACTCCTAGCAGTTTAAGTTATACTTTAGGAAACACGGTGTCACCAGAAACAACACTAACTGTTATGTCCAATAAGTCACCACAAGTGCAAGATAAAGTTGGAACTGTAGCTGTTGCCGTGACAAATGCAGCAACACAAGTAACAAGGGTTGTGACTGCTGGACCACAAATAGGAGGACGTAGGGCCATGTTCGTTTTAAATGAAGCCCCAACTCATACATTAAATAGGGTGTCCCAACAAAACCAAACTGCGACAATACAAACAACTAATCTAGCATCAAAGCCCTTCATGACTCCCATTGGCCCTATACAGCTTACTGCGGAAGAATGTAACGAAATATTAATGAAACGTGCCTTGCAAGCTCAAGGCATTGCAACACCGGTCATAGATGCTTCACAGTTAAATCATACATTATTGAATAATGGTTTGAAGAGTCTTGCTGAGGCGACCATACAGCAATCACAAGCAGATACAATACCGACAACTACTGTTCACCAGCACCATCTTTTGCATGCTAAACAGGAGCCTGGTACAGCAAATAATTCTCCAAAAGCAGTTTATTCACAAACTGATATGATGACCAACACAGTAATGACAGCGGTGCCTCCCCTGAAAGAGCGGCCGTACTCTTGTGACGAATGTGGCAAATCATTCTTGTTGAAACACCACCTCACGACACATGCAAGAGTCCACACTGGTGAAAGACCACATGTTTGCGGACATTGTGGAAAGGCATTTGCGAGGAAGCATTGTCTTAACACACATTTATTGCTACATTCAGCTGCGCGGCCTTATCGGTGTCATGAGTGTAAGATGGCGTTCACCCTCAAGCATCATCTTGTTACACATTCAAGAGTTCACAGTCGCGACCGTCCTTTCGTATGTGGAGAGTGTGGTCGAGGGTTCCCTCTAAAGCGCCACCTCGTCACGCACAGCAAGTACCACGCCGGCGAGCGGCCTTACGTGTGCACAGATTGTGGAGAAAGCTTTGCGCAGAAGGAGCATCTTGTCATGCATAGTCGATTTCACGGCTCTCTCTCCCCATTCGTGTGTCCAGACTGCGGAGTGGCGTTCGCTAGAAAGTTTCAGCTTGTGAACCATGGCCGAGTTCACGGCAGAGTACCACATGCTTGTCCTGTCTGTGGCAAAGAGTTCTTACAGAAACGGACGCTAGTAGCTCATATGAAAATACATACGGGCGAAGGCGCCGTCATTGGTGCTGATGGTCAAATTATATCGGAAAAGGCGACACCAGGATATATTTGTCCTGAATGTGGCTCTTGTTTCAATACCAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTGGCCGCCGCGCAGCACGCCTCGCACGCGCACAATCAACCTATTCAAATTATTTCGTCTAATCCAAACAACAACGTAGTTCATACACAAGTAATTGCAACAAATCACATATCTACACCGCGGCCGAAATTACACTTTTGTGTTGACTGTGGAAAAGGATTTGCGGCGAAACATGGCTTACTAGCACATCACAGGAGACATCCGGAGGGTAGTTGTACATTAAGGACGCACGTTTGCGATCAATGCGGTAAAGCATTCTTCCAAAAGAATCATTTAATGTTACATCAGCGGCAACATATGGACTTACCACCGAGAAATGTGACGAATCGGTCCGGGCAAGTGATCGGCAACCAGATCGTGGTGGGCACGGTGGGCGGGCGCCGCACGCTGCTCAGCTCGCCGCTGCACATCGTGTCGCGGGACGGCAAGCCGCTCGCCGCGCAGCTCACGCACAAGCGACACGCTGGAGATGTGAAAGAAGTCGGCGGCTTGATGCTGTCGACGGGCCGAGGCACGGGCCTCATCAAGTACGAGATCTCCATCCCGCCGCCCACGTCCGTGGTGCAGGTGCAACAGCTGGACTGA
Protein Sequence: MCMPTPNNVSGFGYSWGFTSTADLTKCEVETPSSLSYTLGNTVSPETTLTVMSNKSPQVQDKVGTVAVAVTNAATQVTRVVTAGPQIGGRRAMFVLNEAPTHTLNRVSQQNQTATIQTTNLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNNGLKSLAEATIQQSQADTIPTTTVHQHHLLHAKQEPGTANNSPKAVYSQTDMMTNTVMTAVPPLKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCGHCGKAFARKHCLNTHLLLHSAARPYRCHECKMAFTLKHHLVTHSRVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCTDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVIGADGQIISEKATPGYICPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQHASHAHNQPIQIISSNPNNNVVHTQVIATNHISTPRPKLHFCVDCGKGFAAKHGLLAHHRRHPEGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNVTNRSGQVIGNQIVVGTVGGRRTLLSSPLHIVSRDGKPLAAQLTHKRHAGDVKEVGGLMLSTGRGTGLIKYEISIPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01079259;
90% Identity: iTF_01506554;
80% Identity: -