Nurt023276.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR990005.1:7459887-7471381[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00038 0.035 15.2 1.5 1 23 238 260 238 260 0.98 2 11 0.043 3.9 8.7 0.7 1 23 267 289 267 289 0.98 3 11 0.69 64 4.9 0.7 1 22 293 314 293 316 0.82 4 11 2.1e-05 0.0019 19.2 2.9 1 23 323 346 323 346 0.94 5 11 9.9e-05 0.0091 17.0 1.1 2 23 353 375 353 375 0.94 6 11 1e-06 9.5e-05 23.2 0.6 1 23 389 411 389 411 0.97 7 11 1e-05 0.00096 20.1 0.2 1 22 417 438 417 442 0.94 8 11 0.00017 0.015 16.3 4.2 1 23 450 473 450 473 0.97 9 11 0.00026 0.024 15.7 0.6 1 23 479 502 479 502 0.96 10 11 1.2e-06 0.00011 23.0 0.2 1 23 511 533 511 533 0.98 11 11 0.0026 0.24 12.6 0.1 1 23 539 562 539 562 0.95
Sequence Information
- Coding Sequence
- ATGGAGAATGGAAAAGTGAATAAAACACAGTATTGTTTGGGTTGTTTGTGCCGAAACGATGAATTTAATTTACAGTGCTATAAATTTCGTAGTGAATTCTTTAAAGGTCTATTCCAGGTGGAATGTGTTCATCTCTGCTTTATTTGTAAATGTTTAATTCAAAAATCGGAGCAATTCATCCAGAATGTCCAGAGTAATCAGATATTCATGGCAAATTGGAATGTTGCAGATTCAACAATCCAAATGGCAAGGAATGAGTTTACACCATCAACCACACTCTCAACGGTACACTTAGATTCATTAGAACTGACTGATAATAAAAAAGAAATTGATGAACCAATATTTGTTACATACAGTAGATGTAAAAGTAAAGATATCAAAATTAAATTAGAGTTAAAGGAAGAAGAGGAAGATCACTTGGAGGGGGAGTTTATTGATGATAATGATTTTCAAGAACCATATCTAAAAGGTGAAGATGATTTCCCCCTAAAAACATTAATAAAAGCCGAAAGCGCTGAACTATTGGACGATATAAGTCTTAAGCAACTTAGAAAAACATTAAAGAGGAGTAAAGTTAAAAAGAGAAGCGAGAAATCCGAAGATGAAATTGAAAATATAGATAACATAATAAATGTTATACATATAACAAGAGAACAATGTTTGAGAGAACGCATTAAGATGACCAAAGATCCGAAGTATTTAAACTCTGTATATAAATGCGAAGATTGTATAAAGGGGTTCACTTTTAAAGAATCATTTGAAAAACATTTGGAGAAACATGATAAGGCGATTGGCGAATACGAGTGTGACATCTGTAAACAGAGGATGGGCACCATGGAAAAACTCTTGAGTCATCAGAGATACCACAGGGTACGTTACAAATGCAGCGAATGTGACCTCACCAGAATCAGTCGTCTAACGATAAAGGATCATTACACAGCTTTTCACCTCCAAGACACCTTCCAGTACAGATGTTCGCATTGCAACAAATTATTTAAACGTCAAGTGTCCCTGAGGAAGCACGTAGCGTACGCACACGTAAGACAAAAGCGGGCGAAGTGTAAGTACTGCCAGAAGACATACGCGAACAAGGAAGTGTTGAAGTCACATATGATTGGAAAGCACTCTACCGAGGTAACGTCAGGAGAAGTCTCGTTCAAGAAGCACGTGTGTCAAGATTGCGGTACGGCTTTCAAAGCGCCCTCGCAGCTCAAGAATCATATGATCAAGCACTCGTTAAGCAGAAATTATTATTGCGTCGAGTGTGACAGGAGCTTCAAGTCGAATAATGCATTGAAACAACATTTAAAAATCGCAGCGCCGCATATCAACTATATGGAGTTACCCTTTCACTGTGATCACTGCGACAAGCGGTTCGGCGTGCGGAGGGACTTGGAACGCCATACGAACAGAGTACATCTTAATATTAAACCGTATCAGTGTGATAAGTGTGATAAGGCGTACGTGAACGGATGGTCGCTAACGGAACACAAGCGGTTCACGCACGAAGGTCACAAGAGGCCGTTGAAATTTCCATGTCCTCTGTGCGATAAGGTTTTCGATCGCAACGCGACCCGCAAAGCTCACATACGCACGCACACGGGCGAGCGTCCGTACTCCTGCAAGAAGTGTCCCGCGCAGTTCAGTCAGGCCAGTGTGCTTGGAACGCACGTCAAACTCGTACACCTCAAGTTGACAAGAGACGGACGACCTAAAGCTCCACTTGCCGTCAAATAA
- Protein Sequence
- MENGKVNKTQYCLGCLCRNDEFNLQCYKFRSEFFKGLFQVECVHLCFICKCLIQKSEQFIQNVQSNQIFMANWNVADSTIQMARNEFTPSTTLSTVHLDSLELTDNKKEIDEPIFVTYSRCKSKDIKIKLELKEEEEDHLEGEFIDDNDFQEPYLKGEDDFPLKTLIKAESAELLDDISLKQLRKTLKRSKVKKRSEKSEDEIENIDNIINVIHITREQCLRERIKMTKDPKYLNSVYKCEDCIKGFTFKESFEKHLEKHDKAIGEYECDICKQRMGTMEKLLSHQRYHRVRYKCSECDLTRISRLTIKDHYTAFHLQDTFQYRCSHCNKLFKRQVSLRKHVAYAHVRQKRAKCKYCQKTYANKEVLKSHMIGKHSTEVTSGEVSFKKHVCQDCGTAFKAPSQLKNHMIKHSLSRNYYCVECDRSFKSNNALKQHLKIAAPHINYMELPFHCDHCDKRFGVRRDLERHTNRVHLNIKPYQCDKCDKAYVNGWSLTEHKRFTHEGHKRPLKFPCPLCDKVFDRNATRKAHIRTHTGERPYSCKKCPAQFSQASVLGTHVKLVHLKLTRDGRPKAPLAVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506556;
- 90% Identity
- iTF_01506556;
- 80% Identity
- -