Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR989999.1:9655879-9660941[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6e-05 0.0024 18.8 5.5 1 23 164 186 164 186 0.99

2 11 6.5e-05 0.006 17.6 1.4 1 23 228 250 228 250 0.98

3 11 1.4e-05 0.0013 19.6 1.9 2 23 258 279 257 279 0.96

4 11 0.0039 0.36 12.0 3.0 1 23 285 307 285 307 0.98

5 11 8.5e-07 7.9e-05 23.5 2.2 1 23 313 335 313 335 0.98

6 11 4.3e-06 0.0004 21.3 0.2 1 23 340 362 340 362 0.96

7 11 5.9e-06 0.00055 20.9 0.6 1 23 368 390 368 390 0.98

8 11 1.9e-05 0.0018 19.3 1.4 1 23 396 418 396 418 0.98

9 11 7.9e-05 0.0073 17.3 6.3 1 23 424 446 424 446 0.98

10 11 1.9e-06 0.00018 22.4 0.7 1 23 452 474 452 474 0.98

11 11 0.00044 0.04 15.0 1.9 1 23 480 502 480 502 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6e-05	0.0024	18.8	5.5	1	23	164	186	164	186	0.99
2	11	6.5e-05	0.006	17.6	1.4	1	23	228	250	228	250	0.98
3	11	1.4e-05	0.0013	19.6	1.9	2	23	258	279	257	279	0.96
4	11	0.0039	0.36	12.0	3.0	1	23	285	307	285	307	0.98
5	11	8.5e-07	7.9e-05	23.5	2.2	1	23	313	335	313	335	0.98
6	11	4.3e-06	0.0004	21.3	0.2	1	23	340	362	340	362	0.96
7	11	5.9e-06	0.00055	20.9	0.6	1	23	368	390	368	390	0.98
8	11	1.9e-05	0.0018	19.3	1.4	1	23	396	418	396	418	0.98
9	11	7.9e-05	0.0073	17.3	6.3	1	23	424	446	424	446	0.98
10	11	1.9e-06	0.00018	22.4	0.7	1	23	452	474	452	474	0.98
11	11	0.00044	0.04	15.0	1.9	1	23	480	502	480	502	0.97

Sequence Information

Coding Sequence: ATGGCAGCTGAAAAAAGCTTAAAATCTTATGAAAACTGTTGCCGTACTTGCTTGAAGGAAGAAACAACATTTGATATATTTATGGAAACTTTAAATTCTACTAACTTGGCAGATATTTTGATATCATGTACCAGGTTAAATATACAAAAAGAAGATTGTTTACCAAAAAAAATGTGTGGCTGTTGTTACAATTGCCTTATGAGTTTTTATCATTTTCGTGAAATAGCAGAGAAAGTAGATACAAAATTAAGAACAAATTCAAAAATTCTAAGTAACAATAATATTAATTTCTTTGACAATATTGATGTGAATAAATGTAAAACAGTTGATATAAAAGGGGAAAATGACACGGAAGTTGATTATTACATCTTTGAACCAAAAATTGAAATGAATCACGAAGAAAACCATATATATGAAAGTAAAAATGAAGATTTTCATTTAGACTCAAATAAATCACAGAATGTTATGAAATTTAATGAAAAAGAGAAGTATAAATGTGCAAATTGTAATAAAACATTTAGAAAGCTATCGAGACTTCAACATCACATTAAGAAACATAATATTCATGATAATTATGATTGTAATAAAAGTATTGAGTCAAAAACTCACGAGGATTTAGAAACTATTTGTCCATTGAATGACAATGAAATTGCAAATGACACTCAAAGTTTAGCTAAAGTTTTTTCATGTCAAGTTTGTCCTTCGAAGTTTAAATCTACAAATTCCCTATCAGCTCATATGAGAAAACATACAGAGAAAGGTAGAGTGATATCTTGTACACAATGCGGCAAGATATTTAAAAAAATAAGTCATTTGAAACGTCATGAGATTATGCACAGTAGAAGTGACTTTCATAAATGTTCTATCTGCCCAAGATCATTTCACAGCGAAGAAATCTTGAAGGGTCATATGAACAAGCACAACGGTATCAAGCCTCATACATGTCCGCTGTGTCCAAAGTCATTTGCTCATTTGTCTACATTGACAACTCATATTAAAGTTCATAAAAAAGATAAATTCCTATGTCCTACTTGTGGAAAGGAGTTTGATTCGAGCGCAAATTTAGATCAGCACGTAAGAAGACACCTTGGGCTAAAGCAATTTGAATGCACACTATGTCCGAGGAAATTTGTAAGTAAAGGTGAATTAAAGTCACACACTATCACTCATACTGGAGAAAGATCTTATACATGTGACCAGTGTGGTGCCACATTTACAAAGCGCAGCTCACTGGGCAAGCACAAGTTACGGCATTTAGGAATCAAACCACACCAGTGTGAAACTTGCTCAATGAAATTTTCAAGTAAGGATCATTTAAAGCGACATAATCGTATCCACACTGGGGAAAAACCATATAAATGTGAAATGTGTGAAAGAGCCTTTACACAAAGCAATGATCTTGTGAAGCACCGCCGGGCACATTTAGGGGAGAAAATTTATAAATGTACAGAATGCAGCGAGAGTTTCAGACTCCATATTGAATTACGACAACATTTATCAGAGCATTATATCTCGTCACAACTTCAAATATCGAATAAACAAAATACAGAAAAGGAAGAAGGCGATGCGAAAGTCCTATCTAATTCGGTTATAAGAAGTGTCATAACAGATGTCATTAATGACACTAGTGCACAGATAAATAATATGATTCCAATGAAAGAATGA
Protein Sequence: MAAEKSLKSYENCCRTCLKEETTFDIFMETLNSTNLADILISCTRLNIQKEDCLPKKMCGCCYNCLMSFYHFREIAEKVDTKLRTNSKILSNNNINFFDNIDVNKCKTVDIKGENDTEVDYYIFEPKIEMNHEENHIYESKNEDFHLDSNKSQNVMKFNEKEKYKCANCNKTFRKLSRLQHHIKKHNIHDNYDCNKSIESKTHEDLETICPLNDNEIANDTQSLAKVFSCQVCPSKFKSTNSLSAHMRKHTEKGRVISCTQCGKIFKKISHLKRHEIMHSRSDFHKCSICPRSFHSEEILKGHMNKHNGIKPHTCPLCPKSFAHLSTLTTHIKVHKKDKFLCPTCGKEFDSSANLDQHVRRHLGLKQFECTLCPRKFVSKGELKSHTITHTGERSYTCDQCGATFTKRSSLGKHKLRHLGIKPHQCETCSMKFSSKDHLKRHNRIHTGEKPYKCEMCERAFTQSNDLVKHRRAHLGEKIYKCTECSESFRLHIELRQHLSEHYISSQLQISNKQNTEKEEGDAKVLSNSVIRSVITDVINDTSAQINNMIPMKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01079241;
90% Identity: iTF_01079241;
80% Identity: -