Nurt008555.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR990012.1:2609921-2611109[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-07 0.00028 21.1 0.0 5 40 19 53 15 58 0.78 2 2 2.1 4.1e+03 -1.8 0.0 7 22 237 251 236 258 0.75
Sequence Information
- Coding Sequence
- ATGCCAAAATTACGTCCCAGAAGTACGAATAAAGCCCAGTGGTCTTCAGACACACTATCCAAAGCGGAAGATCTCATAAATCGAGGTTCATCTATAAGACAAGCTGCCAAATCTATGGGTATACCATTTTCCAGCCTTCAGAAGCGCTTAAAAAAAAAAGATTCCTCGGAACCACGTCTTGGGCGCCAAACCGTATTTAGCAAACAAGTGGAAGAGGACCTGGCAAACCGGAAGACCATGGAATCAAAAACAATTTTGACAAAAATGCAAAAATGGCAAGCCAGTCGGCTTGAAGGATTTCTGAAAAGAAACAACATCGCTATTCGCAAGCCTGAGGCTACCAGCATCAATCGAATCACTGCTTTTAATAGGCGGGAAGTTGAATTGTTTTATGGCTTACTGGAGGAATTGATGGACAAACACAAGTTTTTACCACAAAACATGTACAACTGTGACGAGACTGGAATCTCTACAGTCCAGGATCCTGGAAAAATCTTAGCTCCTAAAGGTGTGAAAAGAGTTGGATCCATCACTAGTTGGGAACGAGGCAAAAACATAACAATGTTGTGTGCAATGAGTTCTGCCGGTGGATTCGTTCCACCGATGTATATTTTTCCAAGGAAGAGAATGTCTCCACAGATGGAGAAAGATGGCCCAGCTGAAAAAATAACACCTTATGATGTGGCAGCGCTATCAAAGAAAGCATATGAAGCTGTGGCATCTATTAACAAAGGAGTGTCTGGATTTCGAGCAACATGTATATTTCCAGTCAACCCTGGTGTATTTTGCGATGAAGACTTTTTACCTGCTTAA
- Protein Sequence
- MPKLRPRSTNKAQWSSDTLSKAEDLINRGSSIRQAAKSMGIPFSSLQKRLKKKDSSEPRLGRQTVFSKQVEEDLANRKTMESKTILTKMQKWQASRLEGFLKRNNIAIRKPEATSINRITAFNRREVELFYGLLEELMDKHKFLPQNMYNCDETGISTVQDPGKILAPKGVKRVGSITSWERGKNITMLCAMSSAGGFVPPMYIFPRKRMSPQMEKDGPAEKITPYDVAALSKKAYEAVASINKGVSGFRATCIFPVNPGVFCDEDFLPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -