Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992271.1:2628507-2637446[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0029 0.26 12.3 0.3 1 23 231 254 231 254 0.97

2 10 2.1 1.8e+02 3.4 2.1 1 23 286 309 286 309 0.79

3 10 0.0015 0.13 13.2 1.0 1 23 349 372 349 372 0.97

4 10 7.3e-07 6.4e-05 23.7 1.3 1 23 377 399 377 399 0.98

5 10 0.14 13 7.0 0.1 2 23 407 427 406 427 0.94

6 10 0.00065 0.058 14.4 2.5 2 21 434 453 433 454 0.95

7 10 0.00068 0.06 14.3 1.3 2 23 467 489 466 489 0.95

8 10 0.0028 0.25 12.4 1.8 1 23 495 518 495 518 0.96

9 10 0.0011 0.099 13.6 1.0 1 23 530 552 530 552 0.94

10 10 6e-06 0.00053 20.8 1.5 2 23 559 581 558 581 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0029	0.26	12.3	0.3	1	23	231	254	231	254	0.97
2	10	2.1	1.8e+02	3.4	2.1	1	23	286	309	286	309	0.79
3	10	0.0015	0.13	13.2	1.0	1	23	349	372	349	372	0.97
4	10	7.3e-07	6.4e-05	23.7	1.3	1	23	377	399	377	399	0.98
5	10	0.14	13	7.0	0.1	2	23	407	427	406	427	0.94
6	10	0.00065	0.058	14.4	2.5	2	21	434	453	433	454	0.95
7	10	0.00068	0.06	14.3	1.3	2	23	467	489	466	489	0.95
8	10	0.0028	0.25	12.4	1.8	1	23	495	518	495	518	0.96
9	10	0.0011	0.099	13.6	1.0	1	23	530	552	530	552	0.94
10	10	6e-06	0.00053	20.8	1.5	2	23	559	581	558	581	0.96

Sequence Information

Coding Sequence: ATGGATGAATCACTCATAATATCTATTAAGAATATCTGTTGTACTTGTTTAAGTGTAGATAGAATGTTAACACGACTTTGTAGTATTGAAGATGGTATAAATAATTTGTTTTTCTTGCTTTCGTGTGATTCAGAAGCTTATGAGATATTATGTTACAAAGAAGTGGCAGATCTTTTTATATGTTGGGAGTGTAAGGCATTGTTGAACCGACTGTGTAACTTCAGGGAGCAGGCATGCTTTTCTCAAAAACAATTAGATTATGTTGTTAATGGCACTAAAAAAAATCAGCACTATTGCCTGTCTAAATTGTCCGAAACTCACCAAAATTTGTACGACTATGAATTTGTAACAAATGACGTCACAACGGAAGATGAAGAGCGTGACTTGATTAAAAGTGAGAGCGATGCAGAGTTCCTAGTCTTATCAGACGTATGTAACGATTCAGATGAGAAAGCCATGGATGATGATGGAGATGTATTCGTTGAATTTGACATAGATACATACAAATGTGCACTAGAAACCACAAACAGAGACGTTGAAAGCATCTTAAATACAGATAACAAACGGAATCACATCAAAAAGGTTATAGTAGAGGAGAATATGAATTATACAATAATAAAAATGACAGAACGGGAGTTGAAAAAGTGTTTGCGAGAAAGGAAGTCGGTGCCAAGTTTCGTTGAAGCGACCTTTAAGTGTGGTACATGTATAGAAGTTTATAAAGATAAGATGGAATTGCAATCACATATGGACAAGGCACATGAAAAGCTACCGAAACACAGGAAGTGCGACATTTGCGAGGTGTACGTGAAACGGAAATGGTTCGACGAGCACAGGAGCGACCACTACCTGAAGTATCAGTGTCACTTCTGCGACCACACGTCGTACAACGTGCTTGTTATATTGAAACATTTGAAGATAGGTCACGCTGTTAAGAGCATACCCAAGGAGATACGGAAATTACGAAAGAGATCGTATATTAAGAATCCAGGGTTGAAGCCGTGGTTAGCGGACGTGTCGACGGACACGCTCTCGTCCGTGGGTTACGTGTGCTCGAAGTGCAACGAATTATTTGATACGAAAAAACAGCGGACGATACACATACAGAGAGTACACAAACAGACGGACTACAAGTGTTCGACGTGCGGAAAGATGTTCACCGGCTCGTATAATTTGATGAATCATGAGCGGTTACATAAGGGCACTTTGCCGCGACAGCCTTGCCCGGTATGCGGTAAGCTGATCAGGTACGACACGATGAAGGTGCATCTTAAAGTTCACGACGAACGGGAAAGCGTGAAATGCTTCGAGTGCGACAAGTCGTTTGTTTCGCATTCGTCTTATCTCCATCACTTGAAGTTTACGAAGACGCACGCCGGTAACGAAGCGTTTAGAATTCAATGTCCGATTTGCAAGAGAGGTTTCCGAACGAAGGCCGATCGCCACGATCACATCAACTACCGGCACATGGGGAAGAGCAACCACAAATGTCCGATTTGTAATAAGATAATGTCGTCGGGCAGGCTGCTTACACGTCACTTGAAATATACACACTACGGCGAGAAAAAGGAGACGGTGAGAAAGATATACTTATGTCAAACGTGTGGCAAAGTTTGTCGGGATACAACGGCGTTAAGGGAACATGAGTCCATACATACAGGGGAGAAGCCGCTGTCGTGCGAGCTCTGCGGGAAACGGTTCAGGAGGAGCGGCGCGCTCTGCACGCATAAGAGAATCGCCCACAAGGTCATTTCGAAGAGATTATTGTTGAAGCACTCAGATTCAAGTGTTGAGGACGTAGAGGAATAA
Protein Sequence: MDESLIISIKNICCTCLSVDRMLTRLCSIEDGINNLFFLLSCDSEAYEILCYKEVADLFICWECKALLNRLCNFREQACFSQKQLDYVVNGTKKNQHYCLSKLSETHQNLYDYEFVTNDVTTEDEERDLIKSESDAEFLVLSDVCNDSDEKAMDDDGDVFVEFDIDTYKCALETTNRDVESILNTDNKRNHIKKVIVEENMNYTIIKMTERELKKCLRERKSVPSFVEATFKCGTCIEVYKDKMELQSHMDKAHEKLPKHRKCDICEVYVKRKWFDEHRSDHYLKYQCHFCDHTSYNVLVILKHLKIGHAVKSIPKEIRKLRKRSYIKNPGLKPWLADVSTDTLSSVGYVCSKCNELFDTKKQRTIHIQRVHKQTDYKCSTCGKMFTGSYNLMNHERLHKGTLPRQPCPVCGKLIRYDTMKVHLKVHDERESVKCFECDKSFVSHSSYLHHLKFTKTHAGNEAFRIQCPICKRGFRTKADRHDHINYRHMGKSNHKCPICNKIMSSGRLLTRHLKYTHYGEKKETVRKIYLCQTCGKVCRDTTALREHESIHTGEKPLSCELCGKRFRRSGALCTHKRIAHKVISKRLLLKHSDSSVEDVEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078510;
90% Identity: -
80% Identity: -