Npol005881.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992271.1:1720003-1738584[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.088 7.7 7.7 0.4 1 23 353 375 353 375 0.97 2 12 0.00051 0.045 14.7 7.1 1 23 382 404 382 405 0.95 3 12 0.059 5.2 8.2 1.8 1 23 409 431 409 431 0.97 4 12 0.053 4.7 8.4 1.8 1 23 436 459 436 459 0.97 5 12 0.016 1.5 10.0 0.2 1 23 463 486 463 486 0.93 6 12 0.0092 0.81 10.8 0.5 3 21 500 518 499 523 0.93 7 12 1.3 1.1e+02 4.1 0.4 2 23 576 598 575 598 0.94 8 12 0.008 0.71 11.0 0.7 2 20 614 632 613 635 0.91 9 12 0.00022 0.02 15.9 0.3 1 23 641 663 641 663 0.97 10 12 1e-05 0.0009 20.1 1.0 1 20 670 689 670 691 0.95 11 12 6.2e-05 0.0054 17.6 1.0 4 23 698 717 698 717 0.95 12 12 4.5e-05 0.0039 18.1 4.1 1 23 723 746 723 746 0.95
Sequence Information
- Coding Sequence
- ATGCGGTGCTGCGTGCCTTCCTGTAAAAACGATTCTAGACATATTTCTAAATCTCAAGGAATAACATTTCATGTCTTTCCAACGGAACCCGCTCTACGGGCCTTGTGGTTGAGAGCATTGGGTAAGGACACATGGTCACCAAGGGAGAGGAGCGCTGTGTGCTCGGAACACTTCTTGTGTGACGATCTCTATGAAACAAAGAGTGGATTGAGGAAAGTGAGGACCGGAGCTGTACCCATTGTGATGCAAGATACACCAAACTGTGAATTTGGCGAATCGGCTAGTTCAAAGATTTGCAGAATATGCCTCGGTATGAATATGAAGCTGTATTCAATGAGGATATACAAATTGGACAAAGCATATGAAAATCTGACTGGAGTCATGTTGTCCGGAGACGAGCTACCGCAGAAGCTGTGCGCGGACTGCGCTAAGAGATTATTGAATTGTGATAGATTGAGATCGAAGAGTTTAAGAGCGAACTTGTTGCTCTTGGAGCTAGTTAAGAAAGATGAGATTCTAACTGTTCATAAAATAAACACAATTAACCGCGAGAACAACCAATTATCGTCCGAATTTATAAAAAAAACATTCGAACCCGACCATTGCGATCTATACATAGAATACTCGGAAAGTCAACACGAAGAGACGGACAAAAATCCCATACAGGAAACGGAATCGGAAAATTTGGACGTGAAGAGCGAGAAAGACGACGATTTATACATGAACGAAATATTTACCGAGGCCAGAGATGAAATTAATATTAACGGTGATGAAATAGACGATGATGAAACGAACTTCGTAGCGACGAACTATTCGACGGACGACAGTCTACCGCTCGAGACGCAAAGGAAGAAAGTCAAAAAGATAAAAACTAAGGAGAAGAAATTAAGGAAGAAGATAAAAGATAAAGCCGAACCGAAGATAGATAGACGAAGGAAGCCGTTCCTGAACGATGATCTGAACGAAACGCTGTTCACGATAACCGATCTAACATTTGACGAGCAAGTCGCCGAAATACATAAGAGACAAGAGTCGTCCAATTACAAGAACTCAATGTATAAATGTGCGGAGTGTTTTAAAGGGTTTTTGGATGAAACTGCGTACAACGGACACATGACGAGGCATACGAACCAATGCGGCGAGTTCGAGTGCGACATATGCAAGACTCACTTCAAACACCCGCACGCGTTGCGGAAGCACATCACGGCGCACCACACGCAGCGCTTCAGCTGTAACCAGTGTCCGTATGTGACGACGCACCGACAGACAGCTAGACTGCACGAAAGATGGCACAAGGGTACGAAGTATCAATGTCCGCACTGTCAGGATGAATTCGTTAAATTCACAACGTACATGGGTCACATACGGATAAAGCACCCGTCGGACTTTGTGTGTGCGCTGTGCGGGTATTCCTTCGTCAGCGAGAAAGGAATCGAACTTCACAAGAAACTCAAACATCGTCTCGACGACGGACAGATACCCGAAGACGGTCCGCTGTGCGACATGTGCAACGTGAGATTCGTGTCGCAGGAGGCGTACAGGAGGCACCTGCACGTCTCCGCGCGGCACAACACGAGCGATTCTGATTCGAAAGAATCAAACAAAGCGAGAAAGGGGAGATCTCGTATCGTCAGAGAGAAGAAGAGAAGTATAGACGACGGAGATGATGACGACGAGAAGAAGAAAGTTTATCCGAGTCAGATGAGGAAGGCGGAGGGTCCGATACCATGTGAACAGTGCGGTCTCCAATTAGAAGATTCCAGAGCGTACCACGGACATTTCAGACGGATGCATCCTGATAAGAATCGAACCAAGTACCCATCGATGAAGTCGCCCTGCATGTGCGAGGTGTGCGGGAGGATGTTCCAAAGCTACGCGCTGCTGAAGGACCACCGCTGGGTGCACACGGGCGAGCGGCCGTTCGCGTGCGAGTCGTGCGGGAAGGCGTTCCGCATGCGGCAGCGACTCGTGGCGCACAGGAGGGTGCACGCGCCGCGACGGGCCGCCTTCGTGTGCGCGCTGTGTGGGAAGAGCTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTACCGCTCCCCTCTCCCCCGTGTGCGGGAAGAGCTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCATCCACACAGGGCTGAAGCCGTTCAAGTGCGAGATGTGCGGGAAGTGCTTCAAGCACGCGAGCGAAAAGCGCGCGCACATCACGTACGTGCACCTGAAGAAGCCGTGGCCGAAGCGAGCGCGGGGGAAGCGACGGACGGACAGACCGGGACAGATGGGTCAAGGTTCGCTGCCGGCGGGAGTGAGCGAGATGGACATAGCCCAGCCCATGTGGCCCAATTGTGACCCCAAAATGGGTGACATGAACAATATCATAGACGATAAACCCGTGTATTACAATTTGAAAATATAG
- Protein Sequence
- MRCCVPSCKNDSRHISKSQGITFHVFPTEPALRALWLRALGKDTWSPRERSAVCSEHFLCDDLYETKSGLRKVRTGAVPIVMQDTPNCEFGESASSKICRICLGMNMKLYSMRIYKLDKAYENLTGVMLSGDELPQKLCADCAKRLLNCDRLRSKSLRANLLLLELVKKDEILTVHKINTINRENNQLSSEFIKKTFEPDHCDLYIEYSESQHEETDKNPIQETESENLDVKSEKDDDLYMNEIFTEARDEININGDEIDDDETNFVATNYSTDDSLPLETQRKKVKKIKTKEKKLRKKIKDKAEPKIDRRRKPFLNDDLNETLFTITDLTFDEQVAEIHKRQESSNYKNSMYKCAECFKGFLDETAYNGHMTRHTNQCGEFECDICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCALCGYSFVSEKGIELHKKLKHRLDDGQIPEDGPLCDMCNVRFVSQEAYRRHLHVSARHNTSDSDSKESNKARKGRSRIVREKKRSIDDGDDDDEKKKVYPSQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFACESCGKAFRMRQRLVAHRRVHAPRRAAFVCALCGKSFSTHSNRQRHMFVSTAPLSPVCGKSFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRARGKRRTDRPGQMGQGSLPAGVSEMDIAQPMWPNCDPKMGDMNNIIDDKPVYYNLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00825075;
- 90% Identity
- iTF_01079963;
- 80% Identity
- iTF_01079963;