Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992268.1:2018111-2021801[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0045 0.4 11.8 0.5 1 23 79 102 79 102 0.91

2 11 0.031 2.7 9.1 0.2 1 23 197 220 197 220 0.92

3 11 0.1 9 7.5 0.0 2 23 247 269 246 269 0.95

4 11 0.017 1.5 10.0 1.3 2 23 295 316 294 316 0.97

5 11 0.00018 0.016 16.1 0.0 1 23 320 342 320 342 0.98

6 11 0.0058 0.51 11.4 2.5 1 21 347 367 347 370 0.93

7 11 0.049 4.3 8.5 0.4 2 23 378 400 377 400 0.97

8 11 9.5e-06 0.00084 20.2 4.1 2 23 407 428 407 429 0.95

9 11 0.0055 0.49 11.5 4.5 1 23 435 457 435 457 0.97

10 11 1.8e-05 0.0016 19.3 4.4 1 23 463 485 463 485 0.99

11 11 0.00015 0.014 16.4 6.0 1 23 491 514 491 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0045	0.4	11.8	0.5	1	23	79	102	79	102	0.91
2	11	0.031	2.7	9.1	0.2	1	23	197	220	197	220	0.92
3	11	0.1	9	7.5	0.0	2	23	247	269	246	269	0.95
4	11	0.017	1.5	10.0	1.3	2	23	295	316	294	316	0.97
5	11	0.00018	0.016	16.1	0.0	1	23	320	342	320	342	0.98
6	11	0.0058	0.51	11.4	2.5	1	21	347	367	347	370	0.93
7	11	0.049	4.3	8.5	0.4	2	23	378	400	377	400	0.97
8	11	9.5e-06	0.00084	20.2	4.1	2	23	407	428	407	429	0.95
9	11	0.0055	0.49	11.5	4.5	1	23	435	457	435	457	0.97
10	11	1.8e-05	0.0016	19.3	4.4	1	23	463	485	463	485	0.99
11	11	0.00015	0.014	16.4	6.0	1	23	491	514	491	514	0.98

Sequence Information

Coding Sequence: ATGATGACAGGTGATGAACAAATAATCATCGTATCTGGTGAAAAGGCTGAAGAGCTCCTCCACAAATTACAAGAGTCAAGAGTTAATAGCGCATCGCGTAGCCGTAATAAGAAATCAGCTAAAAGTAAACTAGATGACAAACGTATGCTAGAGGTCGAAAAACATCGGAGCAATATGACGGAAATATTGCTGAACTCAAACGCGACGCCGATACGTTTCCGTGGTGATATTGGTTATGCTTGTTGCTTTTGCTCGGAGCAGTTTCCGGATCCGGCCGACTTAAAAAATCACACGATAGACAATCATGACGCGAAGAGTATTAAAAAAGTTGTCCAAGAAATGCGAGTGTATACAGTTAAATTAGATATCACCGAATTGAAATGTAAACTGTCCGAAAGTCTAAATAAAGAAGACGTAAAAGAAAATAGTAAAGAAAAATCAACGGAAGAAGAAATTACTATAATAGAAATAACAAGAGAACGGAAAAAGCTAAAACCAATTAAAGAATTATCAAAGCACCATCATAATATAAAAGAGGTACTCCAATGGTCTAACACGACTCCAATACATGGTAAAAGTGATCTGGGCTACTTGTGTAGTTACTGCTCGGATAAATACCCAGACCCAGCTGATTTGAAGCAACACACGTTACAGCTGCATAAAAACGACTCGAAACCTAAATTCTTTCAGAAGAGAGATCTAAAAAAATTTCACGTTAAAGTTGACATAACGGGACTTCAATGCGATATTTGTAAAATGGATGTACAGAGTATAGAAGATTTGATAGAACATTTGAGAAATATACACGATCGAAAGATTTATACGGATGTCAAGAATCGCATAGTTCCATTCAGGTTTGATGGATCAAATCTGACTGAGTTGAAATGCGTCGTTTGTTCGAATACTTACACGAAATTTAAGATGCTTTTAGAGCATATGAATAAGCACTCGAGGAATTACGAGTGCGGCGTATGCGGCGCTGGTTTCATCACTAACAGAGCGTTATTGAATCACCTGGATCGTCACGACATCGGCGAGTACAACTGTGAATACTGCGATAAAGTATTTGACACTATAAGCAAGAAGAATACACACGTGAGGTGCGTTCACGTTCATAATTACTTACTGAATAAATGCGGCTATTGCAATCTAAAGTTCGCCGGGTATCGAACGAAAGCGGAACACTTGAGAACGGCCCACGGTATAACGGAACGCGCCAAGTGCCAAGCGTGTGAAAAGAGTTTCTCCTCAAAGGACTCTTTAAAAAAACACATAAAAAGCCACCATTTAATGGATTATCGATACAATTGTTCTCTTTGTGACATGAAGTGCCACTCTAATAAGAACTTGGAAGATCATATGGTTAAGCATACGAAGACTCGCAACTTTCAGTGCAAGGTCTGTTTTAAGCGATATGGAAGACAACATACGTTGAAAGAGCATATGCGTATCCATGACAACGATAGGAGATTCAAGTGCGAGCACTGTTCGATGGCATTTGTCCAAAAGTGCAGTTGGCGTCGTCATATGCAAACCAAGCATGAAGATCAAGTAGAAGAATTGTCTCAAAGATACAGCCAATAA
Protein Sequence: MMTGDEQIIIVSGEKAEELLHKLQESRVNSASRSRNKKSAKSKLDDKRMLEVEKHRSNMTEILLNSNATPIRFRGDIGYACCFCSEQFPDPADLKNHTIDNHDAKSIKKVVQEMRVYTVKLDITELKCKLSESLNKEDVKENSKEKSTEEEITIIEITRERKKLKPIKELSKHHHNIKEVLQWSNTTPIHGKSDLGYLCSYCSDKYPDPADLKQHTLQLHKNDSKPKFFQKRDLKKFHVKVDITGLQCDICKMDVQSIEDLIEHLRNIHDRKIYTDVKNRIVPFRFDGSNLTELKCVVCSNTYTKFKMLLEHMNKHSRNYECGVCGAGFITNRALLNHLDRHDIGEYNCEYCDKVFDTISKKNTHVRCVHVHNYLLNKCGYCNLKFAGYRTKAEHLRTAHGITERAKCQACEKSFSSKDSLKKHIKSHHLMDYRYNCSLCDMKCHSNKNLEDHMVKHTKTRNFQCKVCFKRYGRQHTLKEHMRIHDNDRRFKCEHCSMAFVQKCSWRRHMQTKHEDQVEELSQRYSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -