Npol006672.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992266.1:8101022-8112313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.96 85 4.4 0.0 1 23 175 197 175 197 0.95 2 11 0.0053 0.47 11.5 0.3 1 23 204 226 204 226 0.96 3 11 0.13 11 7.2 0.1 1 23 230 253 230 253 0.97 4 11 2.9e-05 0.0026 18.6 3.0 1 23 258 281 258 281 0.94 5 11 0.013 1.1 10.3 0.9 2 23 288 309 287 309 0.96 6 11 1.3e-06 0.00011 22.9 1.8 3 23 323 343 322 343 0.98 7 11 0.0013 0.12 13.4 3.8 2 23 350 371 349 372 0.94 8 11 0.026 2.3 9.4 0.7 1 23 513 536 513 536 0.94 9 11 0.024 2.1 9.5 0.1 6 23 546 564 545 564 0.92 10 11 3.3e-06 0.00029 21.6 0.2 2 23 574 595 573 595 0.97 11 11 1.4e-05 0.0012 19.7 1.6 1 23 600 623 600 623 0.96
Sequence Information
- Coding Sequence
- ATGTATACAGATATACAAATCAAAGAAGAACCGGTAGAACATGAGATAGATATTGAAGTGAATTTAAAAATAGAAAATGATACCAAGGAGGTTGATAGTGTGTGTCCAGAAAATTTTGTTACTATTAAACAAGAAATAACTAATAATTTGACCGTCAAATTAGAGCCTATAGATCAGGATGAAAATCCATATGAAAACCAAGACATAGTTCCGGAACAAATGGTTATGAAACTTGATCCTACATATTACAATGGTGAATTTTATAAAAGTTACGATGGAAAACTATTAAGAACCTCAAGAGCTAGAAAAGACAACGATGAAATGGACAATGAGTATTTGCCTGCGAAGAGTAAGAAAAAGAAACCGGTGTCTAACGTTAAACCACTTTTCAAAGGCAAACAGAGAAATGACGAACAGACATATTCAGATGATATAACGAAACACATAGAAATAGTGACGATAGATGAGGCCGAGCGACTCGTGGAACATCATGACTTGTTCAATAGTCGGAAGCACATGAACTACACGTGCGAGCCGTGCGCGCTCGGGTTCGTTATCGAGGACGCTTATCAAATGCACATGAAAATACATTCGCCGGAGAACGGCAGCCACGCGTGCGACATCTGCGGCGCGCGCGTGAAGAGCGCGGACGTGCTGTACCGGCACCGCCTGCGCCACTACCGGCGCTACCGCTGCCGCGTGTGCGCGCTGCGCCTGCGCGACAAGGACACGGTGGCGGCGCACGTCATGCGCGAGCACGTCGGCGCCGCCTTCCGCTGCGACCACTGCCAGCGCGGGTTCAAACGGCCGCAGTACCTGAAACGACACGTGGAGCAGATGCACACGAAACCGCTGCACCTGGAGTGTCCCGTGTGTCAGCGCGTGTTCTACGAGCGGGGCTGGTACCGGTGCCATGTCAGGACTCACAATGAAGAAGTGCGCAAGAATATTGATAGGAAGGCGATATGTTCGCATTGCGGACGTGAATTTAGGAATAAAGCCTACCTCATACGACACTTGCAGACACACGAGGACCGCCAGCCAGTCGTATGTAAGCACTGTTCTAGAACGTTCAAGAACATTGAAGTGCTCAGGGTACATTACAGGCAACATCATTCGAAGAATCCCCTGAATGAAGATGGTACATACAACGAGAACTTCACGGGACGGACGTACGCTTCGCAGGGGGGAGTGAGAGGCCACGGCGGCCAATTTCGAGAGAGATTAGCCAACTGCGCAGGAGATATTATAGTGCACAAGTGTGTGCGTCAACACAAGTGCACTCTCTATTCCCTTACTCTCATAACCCGATGGGACGGCAATCCGACACGACCGGAAAGAGTTCAGGCGCAAAACCAACTGCTTTACGTGCTCTCCGAGGCACGAGAGTGTACACTTCCAACTTCCAGACTCCGGGCAGCTACTGAGAACTTTCAACAGAAAATCTCAATAACATTTCAGTGGCCCGACCTGGGAATCGAACCCAGGACTACCGTGTCTGGGGCCTTACATCTAGCCACTGGACCGACGAGGCAATTCCAGTGCGACTACTGCAAGAAGTGGTACTTCACGAAGGCGGAGGTGCGCTCGCACATCGAGTGGTCGCACCTCCAGCAGCGCCGCCACGCGTGCGCGTGCGGCCGCGTGTTCCGCACGCCCGCCCGCCTGCGCGCGCACGCCTGCGCCGTGCACCTGCGCCTGCCGCCCGTGCGCGACAAGACCTGCCCCGTCTGCGGGAAGATGTTCGCGAATCAGCAGGTGCTCACGCGTCACATCAAAGGTCACTCGGGCGAAACGTACCCGTGCAACGAGTGCGGGCAGAAGTTCAAGACTCAGTCGTACGTCAAAATACATTACAAGCTGAAGCATCTGAAGATGTCGCGAGCCGAGATCAAAGCTCAGAGCAAGCGGACGCTTATCACGGTCGAGAACAGTATGAACGAGAGGATGGTGTCGAAGGTGAAAGCCTACGATCCGATCACGAGCGGCGACGACCCGCTCTACATAGACGCGCAAGAAAGAGAAAACGGTGTGAAGACAGAGAACCAAAACATATCTGTGCCGCTCTTTGAAACATTCGTCGATATACAGCGGGAGTGTTGA
- Protein Sequence
- MYTDIQIKEEPVEHEIDIEVNLKIENDTKEVDSVCPENFVTIKQEITNNLTVKLEPIDQDENPYENQDIVPEQMVMKLDPTYYNGEFYKSYDGKLLRTSRARKDNDEMDNEYLPAKSKKKKPVSNVKPLFKGKQRNDEQTYSDDITKHIEIVTIDEAERLVEHHDLFNSRKHMNYTCEPCALGFVIEDAYQMHMKIHSPENGSHACDICGARVKSADVLYRHRLRHYRRYRCRVCALRLRDKDTVAAHVMREHVGAAFRCDHCQRGFKRPQYLKRHVEQMHTKPLHLECPVCQRVFYERGWYRCHVRTHNEEVRKNIDRKAICSHCGREFRNKAYLIRHLQTHEDRQPVVCKHCSRTFKNIEVLRVHYRQHHSKNPLNEDGTYNENFTGRTYASQGGVRGHGGQFRERLANCAGDIIVHKCVRQHKCTLYSLTLITRWDGNPTRPERVQAQNQLLYVLSEARECTLPTSRLRAATENFQQKISITFQWPDLGIEPRTTVSGALHLATGPTRQFQCDYCKKWYFTKAEVRSHIEWSHLQQRRHACACGRVFRTPARLRAHACAVHLRLPPVRDKTCPVCGKMFANQQVLTRHIKGHSGETYPCNECGQKFKTQSYVKIHYKLKHLKMSRAEIKAQSKRTLITVENSMNERMVSKVKAYDPITSGDDPLYIDAQERENGVKTENQNISVPLFETFVDIQREC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506567;
- 90% Identity
- -
- 80% Identity
- -