Npol018029.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992270.1:464345-470276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 1.1 10.4 0.7 2 23 171 192 171 192 0.91 2 11 3.1e-05 0.0027 18.6 1.3 1 23 208 230 208 230 0.97 3 11 0.55 49 5.2 1.6 1 23 236 258 236 258 0.88 4 11 2e-05 0.0018 19.1 1.4 1 23 265 288 265 288 0.96 5 11 2.4e-06 0.00021 22.0 0.3 1 23 294 316 294 316 0.99 6 11 3.3e-05 0.0029 18.5 1.4 1 23 322 344 322 344 0.95 7 11 0.046 4 8.6 2.0 1 23 354 376 354 376 0.98 8 11 4.4e-05 0.0039 18.1 0.3 1 23 382 404 382 404 0.98 9 11 5.3e-06 0.00047 21.0 3.3 1 23 410 432 410 432 0.94 10 11 0.00024 0.021 15.8 2.3 1 23 472 495 472 495 0.96 11 11 2.7e-07 2.4e-05 25.0 0.6 2 23 501 523 500 523 0.96
Sequence Information
- Coding Sequence
- ATGACCGAAATTTGGAATTTAAACGCATTATGCAGGTGTTGTCTTGCTGATGGCAGCTTTAGAGATTTAAATTCAACTTGCAACGTAATGGGTTCTGTTGAATTATGTACGGATTTGTTAAAAGACACTTTTGGCATAAATCTACCATCACCGACCATTGAAGTCAGTAACACCATATGTGATGAATGTATATGTCAATTGCAAAATGCTACAAAATTCAAGAGAAAGGTGATGGACTGCGAGGAAAAGTTTCAGGAATACTGTAAAAATGAGTTATTGCAATATATAAATATAAAATTGGAGAACGAAGACGATTACCATGTTATAGCGAAGACTGAAATAGCTTTGAAAGACGAACATAACGATCACGCTGATCAATTAAAACAAGAAACGCCAACAATGAATATACAATGTGATCCTCAAGATAACAGACCAGAGGATGAACCAAAGAATAATACCACTATACAACACGGGAAGCAAGAGAATAAATGTAGTAAAGCAAAAGACCGCACGTGCAATATCTGCGATATTACTTTCAAAAGACTCGAGATATACAACAAACACGTGTTCAACCATTCTATATGTGTAAATCCCACGATTCCTCTATCAGACATCAAGAAGTTCGACTGCAAAATGTGCAGCAAAAGTTACCGAACGATTGGTGACTTGCGCGCTCACAGAAACAAACACACCAGAGAGATTATATACATTTGTGATATATGTAAATCGGAGTTGCTCGCCAAGAGCTCGTTGAGGAAGCATATGCTCTTGCACTTGGGGCTCAACAAGCAATACATGTGCCACACGTGCGGGAATTCATTCAACGATATAACGAATTTGAATAAACACATAACGTCCGTTCACGAAAAGCTGAGACTTTACAAGTGCACGCTTTGCCCGAAGGAGTTCGCCGCGAATAAAACGTTGACTGTTCATATGCGTGTTCACACGGGAGAGAGGCCGTACAATTGCAAAATGTGCGATAAGGCATTTATTTCCTACTCATACCTCTCTAGGCATGAAACTAATCACGAAAGAAAGAGAAAATTCGGCGGTGCATACATTTGCAAGTTTTGCAAAGACGTTTTCGATCATCGTGGAGTTTATGTTTCACATTTAAGAACACACGTCACAGCGAGTAAGTACAATTGTGCGAAATGCGGGGAAAATTTCGCGAATGGGTACTCGCTGAAACGTCACTGGGAAACGCACAACGATGTTAAGAAATACTCTTGCGATAAATGCGATCGAAAGTTCACGACAAAAGCAAACCTACGCAAACATGGAATACATCACGATGGAAATAAATTGTCAATGAAGAGAACAGTGAAGAGTGATAAAATTAACTGTAAGCTGTGTAAGAAGTTGGTGACAAATATAGATAAACATCTGAATACACATTATAACAGACGACATCGATGCGATTTCTGCGATAAATCGTACGCCGAGAGGAACACGCTGAACCGACACGTGAAACAGTTCCATGATGGAGTTCGCCAGGAGTGCGACGTGTGCGGAAAGAGATTTGTAAATACAAGTAGCTTGAAGGCACATATGAAAAAACTTCATGATTTAATTATAAAGAAAAGTGAAGAGGAATGA
- Protein Sequence
- MTEIWNLNALCRCCLADGSFRDLNSTCNVMGSVELCTDLLKDTFGINLPSPTIEVSNTICDECICQLQNATKFKRKVMDCEEKFQEYCKNELLQYINIKLENEDDYHVIAKTEIALKDEHNDHADQLKQETPTMNIQCDPQDNRPEDEPKNNTTIQHGKQENKCSKAKDRTCNICDITFKRLEIYNKHVFNHSICVNPTIPLSDIKKFDCKMCSKSYRTIGDLRAHRNKHTREIIYICDICKSELLAKSSLRKHMLLHLGLNKQYMCHTCGNSFNDITNLNKHITSVHEKLRLYKCTLCPKEFAANKTLTVHMRVHTGERPYNCKMCDKAFISYSYLSRHETNHERKRKFGGAYICKFCKDVFDHRGVYVSHLRTHVTASKYNCAKCGENFANGYSLKRHWETHNDVKKYSCDKCDRKFTTKANLRKHGIHHDGNKLSMKRTVKSDKINCKLCKKLVTNIDKHLNTHYNRRHRCDFCDKSYAERNTLNRHVKQFHDGVRQECDVCGKRFVNTSSLKAHMKKLHDLIIKKSEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079275;
- 90% Identity
- -
- 80% Identity
- -