Basic Information

Insect: Nymphalis polychloros
Gene Symbol: salm
Assembly: GCA_905220585.1
Location: HG992251.1:5932622-5944116[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00035 0.031 15.2 0.2 2 23 136 157 135 157 0.93

2 11 0.00051 0.045 14.7 2.4 1 23 163 185 163 185 0.96

3 11 0.00011 0.01 16.8 0.5 1 23 283 305 283 305 0.98

4 11 3.1 2.7e+02 2.8 0.1 2 23 312 334 311 334 0.89

5 11 0.00088 0.078 14.0 0.0 3 23 394 415 392 415 0.90

6 11 0.0022 0.2 12.7 0.2 1 23 431 453 431 453 0.96

7 11 8.4e-06 0.00074 20.3 0.2 1 23 479 501 479 501 0.98

8 11 0.00055 0.048 14.6 0.2 1 23 507 529 507 529 0.97

9 11 0.00031 0.027 15.4 0.3 1 23 535 557 535 558 0.95

10 11 0.0036 0.32 12.1 0.1 1 23 571 593 571 593 0.96

11 11 0.0055 0.49 11.5 0.1 1 20 744 763 744 766 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00035	0.031	15.2	0.2	2	23	136	157	135	157	0.93
2	11	0.00051	0.045	14.7	2.4	1	23	163	185	163	185	0.96
3	11	0.00011	0.01	16.8	0.5	1	23	283	305	283	305	0.98
4	11	3.1	2.7e+02	2.8	0.1	2	23	312	334	311	334	0.89
5	11	0.00088	0.078	14.0	0.0	3	23	394	415	392	415	0.90
6	11	0.0022	0.2	12.7	0.2	1	23	431	453	431	453	0.96
7	11	8.4e-06	0.00074	20.3	0.2	1	23	479	501	479	501	0.98
8	11	0.00055	0.048	14.6	0.2	1	23	507	529	507	529	0.97
9	11	0.00031	0.027	15.4	0.3	1	23	535	557	535	558	0.95
10	11	0.0036	0.32	12.1	0.1	1	23	571	593	571	593	0.96
11	11	0.0055	0.49	11.5	0.1	1	20	744	763	744	766	0.94

Sequence Information

Coding Sequence: ATGGAAGGGGAGGATTTTCATCTCCAGTGGGAGGAAGATGTGAAGCCTAATATAGTGGCAAGCGAAGAAGTTATATGTGGCCTTGATAATGTGCAAAATGAAGCATATACAAATATGACAGAAGAGATTATTGAAGATACTGATCAAATGGCAGCCGAAAATCTTATGTATTTATCACAAGATGTAGTTACTTATACAGAAAGTGCTGAGCTTGCTCAAGATCCGAATGTGGAATGTGTTACCGAAGAGGTTGTTACTGACGACTGGGTTACGTCTGGTGGACAAGAAAGAGTGGAGGTACCTATAGAACATTTAGCTATCCCTATTCAAGACATCAAAATAGAAAATGACATTGATGTACCACTACCAACAGATCAAGATGAATACACAGCTATGCGCCCGTGGCCTTGTGATTTCTGTTCACGGCGGTTTCGCAAAAAAGCGGCGTTGATGAACCACATGGTGGCGCACCAAAATGATCGCCCACATGCTTGTAATCTGTGCGGAGTTCGCTACGTGCGCAAGTGCGACCTCATGAACCACCTCAAGGTGCACGCGTTCGTTCCTGACGACCCGGATCCCGCGGAATATCAGCACGATGAAATGATTGCTCAAACACCATCGCTAAAAATTAAGAAAAAGCGAGGACGCCGGAAAAAGACTGCGGAGCCCGTCGAGGAGCAGAACGGAGTGCCGGAGAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGCCGCGCGCGCGCGCCGTCCGCGCCGCCGCCCGCGCCGCCGCCCGCGCCGCCCTCGCCCTCGCCCTCCCCGCCGCCGCCCACGCCGCCGCCGCCCGCCGACCCCTCGCGCCCCTTCGTCTGTCGCCACTGCGGCGTCGGCTTTGCCAGGGAGAAGGCGCTTCAGTCACATTCTAGAGTGCACGGCGGCGACTCGCCCGTGGAGTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGCGCTCGCACGCCGCGTCGCGCCACCCGCACCTCGCGCACGCGCCCACCGTGCCTAAGCGGGAACCCTCCTACGACGACTGCAACTCCGGTGACGATATGGAATTCCGCCTATCACCCCTGGCACACAGCGGCAGCGAGCGCGGCGAGAGGGAGCGCGATCGGGAGCGCGGAACGCTGGACGTACGCGGGCCCGAGCTCTTCTGCGGCGACTGCGGCGTGGCTTTCCAGCGCGCCGACCTGCTGAGGCGACACGTCGCCGCTGCACACAGTTATAAACGGCACGATAGCACGAGCAGCACGTGGGAGCAGGAGCACACTTGCGACGTGTGCGGCGAGAGCTGTCCCGACGCGCTGCAGCTGCTCGCGCACGCGGAGCGACATGCGGAGCGGCCGCGTAACAACAGAATGAAAAGACTGGCACGTGGTCGAAACAACACTTCGAGTGATTTAAAGCAGTTCCCATGCAGAGAATGCGGCAAAGTATTCGGATCTCGCAGCTCGCAGCAGATCCACATCCGCATTCACACCGGCGAGCGACCCTACGCGTGTCGTTTCTGTTGGAAGGCATTCGCAGACGGCGGCACACTGCGTAAGCACGAGAGGATACACACAGGTGAGAAGCCGTACGCGTGCGCTGTGTGTCCGCGCGCGTTCAACCAGCGCGTGGTGTTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGACGCGCTAATGGTGGCTATCAATATTGCTGCGTAGTTTGTGGACGACCTTTAAATTCAAGCGCTGAATTAGTCCAACATCTTATTCAGCACTGTGATGAAAATACAGCACTAAAAAGGCAACCCCAGAATGGACCACGAAAATACAAACGACGGCGAAAAGCGAGAGTGGAAGAGTCGCCGGTACACAATGATTGGGAGCGCGCCACTACACCTTCGCCGACGCGGTCGGCCTCCCCTGCGGGCGCGCCCTCGCCCTCCCCGCCGCGAGCCACGCGCGCCCCGCGGGCCGCCCGCGCGCCGCGCGCCTACTCCCCGCCGCGCCGACGCCGGCGACGCGCGCCACCGCCCCCGCGACCCAAGATGATACACACCGAAGAGCCGAGACCTAGAACGAAACAAGTCCGGAGTCGCAGGCCACCCAGACACCCGGCGGACGACTTGAGAGCAATCGGACCTCATTCCCCGTCGCCGGTTCCGGCCTCCTCCGTACCGTCACCGCCCTCTCCGTCCCAGCTCGCAACCACTACGGATGAAGGCCCATACAAATGTGAAATGTGCTCTTTGGAATTTCCACGACGAGATGCCTTACTTCTTCATGTTCCTATTCACATATGA
Protein Sequence: MEGEDFHLQWEEDVKPNIVASEEVICGLDNVQNEAYTNMTEEIIEDTDQMAAENLMYLSQDVVTYTESAELAQDPNVECVTEEVVTDDWVTSGGQERVEVPIEHLAIPIQDIKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDDPDPAEYQHDEMIAQTPSLKIKKKRGRRKKTAEPVEEQNGVPENMTSARTQQWSRRARAPSAPPPAPPPAPPSPSPSPPPPTPPPPADPSRPFVCRHCGVGFAREKALQSHSRVHGGDSPVECGECGELCWSREALRSHAASRHPHLAHAPTVPKREPSYDDCNSGDDMEFRLSPLAHSGSERGERERDRERGTLDVRGPELFCGDCGVAFQRADLLRRHVAAAHSYKRHDSTSSTWEQEHTCDVCGESCPDALQLLAHAERHAERPRNNRMKRLARGRNNTSSDLKQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYCCVVCGRPLNSSAELVQHLIQHCDENTALKRQPQNGPRKYKRRRKARVEESPVHNDWERATTPSPTRSASPAGAPSPSPPRATRAPRAARAPRAYSPPRRRRRRAPPPPRPKMIHTEEPRPRTKQVRSRRPPRHPADDLRAIGPHSPSPVPASSVPSPPSPSQLATTTDEGPYKCEMCSLEFPRRDALLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824972;
90% Identity: iTF_01508280;
80% Identity: -