Basic Information

Insect: Nymphalis polychloros
Gene Symbol: Sall1
Assembly: GCA_905220585.1
Location: HG992256.1:355684-357255[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.1e-05 0.0027 18.6 0.0 2 23 198 219 197 219 0.97

2 11 9.3e-05 0.0082 17.1 1.0 1 23 225 248 225 248 0.95

3 11 0.00019 0.016 16.1 0.8 1 23 255 277 255 277 0.98

4 11 2.4e-05 0.0021 18.9 0.7 1 23 283 305 283 305 0.98

5 11 2.2e-06 0.00019 22.2 2.5 1 23 311 333 311 333 0.98

6 11 1.1e-05 0.00095 20.0 0.6 1 23 339 361 339 361 0.95

7 11 1.2e-05 0.0011 19.8 0.2 2 23 368 390 368 390 0.96

8 11 0.004 0.35 11.9 0.6 2 23 396 414 395 414 0.84

9 11 0.0019 0.16 13.0 0.4 1 23 420 443 420 443 0.93

10 11 0.0016 0.14 13.1 0.4 1 23 449 474 449 474 0.95

11 11 2.2e-05 0.0019 19.0 2.7 1 23 480 503 480 503 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.1e-05	0.0027	18.6	0.0	2	23	198	219	197	219	0.97
2	11	9.3e-05	0.0082	17.1	1.0	1	23	225	248	225	248	0.95
3	11	0.00019	0.016	16.1	0.8	1	23	255	277	255	277	0.98
4	11	2.4e-05	0.0021	18.9	0.7	1	23	283	305	283	305	0.98
5	11	2.2e-06	0.00019	22.2	2.5	1	23	311	333	311	333	0.98
6	11	1.1e-05	0.00095	20.0	0.6	1	23	339	361	339	361	0.95
7	11	1.2e-05	0.0011	19.8	0.2	2	23	368	390	368	390	0.96
8	11	0.004	0.35	11.9	0.6	2	23	396	414	395	414	0.84
9	11	0.0019	0.16	13.0	0.4	1	23	420	443	420	443	0.93
10	11	0.0016	0.14	13.1	0.4	1	23	449	474	449	474	0.95
11	11	2.2e-05	0.0019	19.0	2.7	1	23	480	503	480	503	0.96

Sequence Information

Coding Sequence: ATGGACTCTTTCATTTGTAGGATTTGTCTTGACAAAACCGGCACCGTATCGGTTTTCGACAAAGAAAGTGACAATGTCCAATACAGCGCTAAATTAATGCGTTTAGTGAACAATACCGTCTCCGAAGAAGATGGTTTACCGAGTATGATGTGCTATACTTGTGCCAACGATCTTTCGTTGGCGTATCAATTTGTACAGAAATGTGAAGCTTCAGATAAGGCATTGCGATGTTTGAGCGCACCGATCGAACTTTATTCAGATTTACAAACAAATATCGAACTTAATATCAAAGAAGAAGATGTAAAACATGAAATTGACGATTGTGACGACCAAGATGATAGTTTCTCTAATAGTTTCTTATTGGAAAACTGTTCAAAAGAGTATTTTCAACAACAAAAAGAGTCAAGTACTACAGTACAAATTATAGATGAAAGCAATATTGCAATAGAAATTGAAAAGGAAGGTCAGGGACAAGATAGTAAATCAGAAAACTTGTTAAATGAACAAAATGATAGTAATGATACAAATTGTAAGGTTATTAAGGGTAAGTTTCGTCGAAACAAAGTGAGGCGTGGAAAATTAGGTCCAATACAGTGTGTCATCTGTGGTCTGATGACCTCTAGCCCTTCTGCGATGGAGATCCATATGCGAACTCATACGGGAGAAAAACCATTCATATGCACATCATGCGGGGCAAAGTTCAGTTCTAAAGGCTTATTGAAAAGACACAATGAAACATTTCATTCAACAAGAGAACGTAAATTTACTTGTGAAACATGTGGCAGTAGTTTTTTTAGAAAAAATGATATCATTTCACATTTAAGAGTCCATACTGATGAAAGGCCTTATGTTTGTCCGTACTGCTCGAAAAGATTTCGACAAGTAGCCTCCAGAAACCGTCACCAAATAGTTCACACTGGAGAAAAGCCATTCTCATGTCCTATTTGTAATAAAAAATTTGCCCATAAAAGCCTAGTTAAGAAACACCAGAGTGTGCACAGTGATGAGAGGAAATATGCTTGCCATTTATGCAACAAAAGTTTTAAATCAAGACCAGCATTAAATGTACATATTGGGTTACACACCAATGAAAAACAAAATGTCTGTAGTTTCTGTGGCATGGCATTTGCTATGAAAGGTAATTTACAAACTCACATCCGCCGAATTCATTCAGAGAAATCGGGACAATGTTCAGTTTGTCTCAAAACCTTTTCTGATTTAGAGGTACACATGCGTAAGCATACAGGTGAAAAACCATACATATGTGGAACATGTAATGCAGCATTTGCAGTCAAACGGAGTCTAGCTCACCATATGATATTTAAGCATGAAAATGCAGGCAAATTCAAATGTTCCATAGGAGACTGTAATAAGACATTCCCAACGGCAACTATGCTAGAGTTTCATCTCTTAAAACAGCATACAAACCATACACCTTACATTTGCCAGCACTGCCCCAGACGATTTTTCCGCACCAGTGATTTGTCGCGACACTTGAGAGCTAGCCATATGGACATAAATTTCAAACCATCTATAAAACCTCTTATTTCTAAACCTGTAATGTATAGTTAA
Protein Sequence: MDSFICRICLDKTGTVSVFDKESDNVQYSAKLMRLVNNTVSEEDGLPSMMCYTCANDLSLAYQFVQKCEASDKALRCLSAPIELYSDLQTNIELNIKEEDVKHEIDDCDDQDDSFSNSFLLENCSKEYFQQQKESSTTVQIIDESNIAIEIEKEGQGQDSKSENLLNEQNDSNDTNCKVIKGKFRRNKVRRGKLGPIQCVICGLMTSSPSAMEIHMRTHTGEKPFICTSCGAKFSSKGLLKRHNETFHSTRERKFTCETCGSSFFRKNDIISHLRVHTDERPYVCPYCSKRFRQVASRNRHQIVHTGEKPFSCPICNKKFAHKSLVKKHQSVHSDERKYACHLCNKSFKSRPALNVHIGLHTNEKQNVCSFCGMAFAMKGNLQTHIRRIHSEKSGQCSVCLKTFSDLEVHMRKHTGEKPYICGTCNAAFAVKRSLAHHMIFKHENAGKFKCSIGDCNKTFPTATMLEFHLLKQHTNHTPYICQHCPRRFFRTSDLSRHLRASHMDINFKPSIKPLISKPVMYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00985369;
90% Identity: iTF_01507425;
80% Identity: -