Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992241.1:7016130-7027258[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4 3.6e+02 2.5 0.1 3 17 60 74 58 75 0.87

2 13 0.00077 0.068 14.2 0.0 2 19 188 205 187 206 0.95

3 13 0.1 8.8 7.5 1.5 1 23 249 271 249 271 0.95

4 13 0.0012 0.11 13.5 0.0 3 23 348 369 347 369 0.96

5 13 0.0066 0.58 11.2 0.2 2 20 375 393 374 395 0.91

6 13 0.0004 0.036 15.0 0.3 1 23 403 426 403 426 0.95

7 13 3.3e-05 0.0029 18.5 3.0 1 23 445 467 445 467 0.97

8 13 1.2e-07 1e-05 26.2 2.5 1 23 474 496 474 496 0.98

9 13 4.1e-08 3.6e-06 27.6 0.7 3 23 513 533 512 533 0.98

10 13 2.4e-05 0.0021 18.9 3.2 1 23 539 561 539 561 0.99

11 13 8.2e-07 7.3e-05 23.5 1.0 2 23 568 589 567 589 0.96

12 13 1e-07 9e-06 26.4 1.0 1 23 595 617 595 617 0.99

13 13 0.0087 0.77 10.8 0.4 1 23 623 645 623 645 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4	3.6e+02	2.5	0.1	3	17	60	74	58	75	0.87
2	13	0.00077	0.068	14.2	0.0	2	19	188	205	187	206	0.95
3	13	0.1	8.8	7.5	1.5	1	23	249	271	249	271	0.95
4	13	0.0012	0.11	13.5	0.0	3	23	348	369	347	369	0.96
5	13	0.0066	0.58	11.2	0.2	2	20	375	393	374	395	0.91
6	13	0.0004	0.036	15.0	0.3	1	23	403	426	403	426	0.95
7	13	3.3e-05	0.0029	18.5	3.0	1	23	445	467	445	467	0.97
8	13	1.2e-07	1e-05	26.2	2.5	1	23	474	496	474	496	0.98
9	13	4.1e-08	3.6e-06	27.6	0.7	3	23	513	533	512	533	0.98
10	13	2.4e-05	0.0021	18.9	3.2	1	23	539	561	539	561	0.99
11	13	8.2e-07	7.3e-05	23.5	1.0	2	23	568	589	567	589	0.96
12	13	1e-07	9e-06	26.4	1.0	1	23	595	617	595	617	0.99
13	13	0.0087	0.77	10.8	0.4	1	23	623	645	623	645	0.98

Sequence Information

Coding Sequence: ATGGCTTTACAAAACAGTATCTTCAAAATTGAAGACTTATGTCGAACGTGTTTATCGAAAGAAATTGAAATGCTTTCTGTTTTCGAAATACGCTTGGGAACTATCACATTGGATAGTATAATTGCATCAATTACAGGAATAAAGATTGAACATGGTGATGGGCTACCATCAACAATATGTAACATCTGTAAGGAAAAAGCAACTAATGCATATGAATTCAAAGCCCGCACGCAAGAAGCTGATATCCAGTTAAGGGGTCTTTTAAAAAGGGAAAATACAGAGCAAATGAATAATGATAATAGTGTAGCATTTGAGTCAGATGCAGTTGAAGTGAAGACTGAACAGTTTGCAAGAGACAATCACGATGACTACATGGACATAGATCTCTCTCTGGCTCTTTCTAATGTTTCTGAGACTTTTAATAATGTAGATACAGTTAAAAATGAAACAGAAGATCACTGCAAAGATATATTTACGACCCAGCCAACTGAAAATGAAAATTTAATTAGTGGTATTAAGAAAAAGTGTTTTATTGTAGATGGTAATGAGACAGACAGCACATACTGCCCTGTTTGCGGTGCGAGTTTCAACGATGCTGAAGGCCTTACGAAGCACGCCTGGGAGCAACACGCTGACCTCATGGGACCAAAAAAGCGAGGCCGCCCTAAGAAGCTACTCACCAGCACGATACTCAATAAATTGTCTGAGAATGGATACAATTTGAAATACTTGCCGGATCATAAGCACAGTTGCGTTTTTTGTAAAGATGATTTTAAAACGAAAGACGACTTAGTGATGCACCTCGAACAACACAAAGATGTAAAAGTGTTGAATTGTCTGCTGTGTAAGAAGATTTATCTTGAGATGAAAGATTTCGAGCGGCACAATTGCGTGCAGACATCAGACGAATTAAATAATTTAAAACCAGCTGAACCTCCAGATGTACCAAAAGAAGAGCGGAAGCTCAACCTGTCTACTGAAGTGTTATTGCAAGATCTACTGATGACTAATAGAGATGCGGAGTCTGGTAGCATTGATTTGTGTGAGGAGTGTGGGGCGGTATTCGTATCCAGTGAGGAACTCGGCAAGCATCGTGACCGAGAACACCCTGAACTTTCCTCGCGATGCCATCTATGTGATAAGGTATTCGCCACTGTGAAGAGCGCGGCTCGTCACAGAGCGGTGTGCGCACGAGTAGAACGTTCATTCGCATGTGCGTCGTGCGGGTTGCGTTTCGCGCACGAAGTTTCACTCAACAAGCACATACTGCGCGCGCATACGGGCCAGAGTGTTTCTGTGCGTTTCATGGACCGCGACAGAGCACCGCCGCAGCACAGATGCGATACTTGCAATAGACGCTTTTACAGAAAAGATTTGCTAGCACGACATGCGAAGGTACACAAGTCTATAGAAAAATGTTTCGAGTGCGACGTCTGCAATAAGAAGTTCCACAGGCGAGACAACCTGAGGGCACACATGCGCGTTCACGAGAGTACCGGCGCAGGCGTTGATGGAACGAGCAGCAGCGCCAGCCTGTGCCTGTACTGCGGTCGAAGTTTCTCGAATTCCTCGAACCTTATTGTGCACATGCGCAGACACACCGGCGAGAAACCGTATAAATGTGATTTCTGTGGGAAAGGTTTCCCTCGTTCGTCTGATTTGCAATGCCATCGGCGCTCGCACACTGGAGAGAAACCCTGCATATGCGGCGTGTGTGGCAAGGCGTTTGCGCGCAGTAATAAGCTGTCAAGACACATGCGCGTACATACAGGTATGAAGCCATACAAGTGCCCTTACTGCGAGAAGGCTTTCTCTCAAAGCAACGATCTCAAACTTCACGTGCGGAGACACACGGGCGATAAGCCCTATGTCTGCGAACTGTGCGGAGATCGTTTCATACAGGGGACAGCTCTACACAACCACAGACGTGCGCACGGGCACTTTCCGACTGCGTCTGCGCCGCCACTCGCGCCCATTGTCTACACTGTTCAGAGCATCACACAGACGCATTAA
Protein Sequence: MALQNSIFKIEDLCRTCLSKEIEMLSVFEIRLGTITLDSIIASITGIKIEHGDGLPSTICNICKEKATNAYEFKARTQEADIQLRGLLKRENTEQMNNDNSVAFESDAVEVKTEQFARDNHDDYMDIDLSLALSNVSETFNNVDTVKNETEDHCKDIFTTQPTENENLISGIKKKCFIVDGNETDSTYCPVCGASFNDAEGLTKHAWEQHADLMGPKKRGRPKKLLTSTILNKLSENGYNLKYLPDHKHSCVFCKDDFKTKDDLVMHLEQHKDVKVLNCLLCKKIYLEMKDFERHNCVQTSDELNNLKPAEPPDVPKEERKLNLSTEVLLQDLLMTNRDAESGSIDLCEECGAVFVSSEELGKHRDREHPELSSRCHLCDKVFATVKSAARHRAVCARVERSFACASCGLRFAHEVSLNKHILRAHTGQSVSVRFMDRDRAPPQHRCDTCNRRFYRKDLLARHAKVHKSIEKCFECDVCNKKFHRRDNLRAHMRVHESTGAGVDGTSSSASLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICGVCGKAFARSNKLSRHMRVHTGMKPYKCPYCEKAFSQSNDLKLHVRRHTGDKPYVCELCGDRFIQGTALHNHRRAHGHFPTASAPPLAPIVYTVQSITQTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080903;
90% Identity: iTF_01507420;
80% Identity: -