Npol020804.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992268.1:1951871-1955625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.06 5.3 8.2 1.0 2 23 57 78 56 78 0.95 2 29 0.013 1.2 10.3 0.1 2 23 106 128 105 128 0.96 3 29 0.0055 0.48 11.5 0.2 2 23 149 171 148 171 0.94 4 29 0.00028 0.024 15.6 1.5 3 23 178 199 176 199 0.97 5 29 0.0013 0.12 13.4 1.2 1 23 203 226 203 226 0.96 6 29 0.0091 0.8 10.8 2.3 2 23 229 251 229 251 0.96 7 29 0.0028 0.24 12.4 2.5 1 23 328 351 328 351 0.93 8 29 0.39 34 5.7 0.1 2 23 379 401 378 401 0.94 9 29 4.7e-05 0.0041 18.0 0.4 1 23 423 446 423 446 0.93 10 29 3.3e-05 0.0029 18.5 2.8 3 23 453 473 452 474 0.94 11 29 5.8e-05 0.0051 17.7 1.1 1 23 480 503 480 503 0.95 12 29 3.5e-05 0.0031 18.4 0.3 1 23 508 531 508 531 0.96 13 29 0.091 8 7.6 7.5 1 23 535 558 535 558 0.97 14 29 0.052 4.6 8.4 0.9 2 23 565 586 564 586 0.96 15 29 0.00028 0.025 15.5 0.9 1 23 635 657 635 657 0.94 16 29 0.23 20 6.4 0.1 2 23 685 707 684 707 0.87 17 29 0.0033 0.29 12.2 0.3 2 23 728 750 727 750 0.95 18 29 0.0074 0.65 11.1 1.1 2 23 756 778 755 778 0.96 19 29 0.0024 0.21 12.6 1.3 1 23 781 804 781 804 0.95 20 29 0.0079 0.69 11.0 4.8 1 23 806 829 806 829 0.96 21 29 0.00058 0.051 14.5 2.4 1 23 903 926 903 926 0.97 22 29 0.84 74 4.6 0.6 2 23 954 976 953 976 0.93 23 29 0.028 2.4 9.3 0.4 1 23 998 1021 998 1021 0.93 24 29 7.4e-05 0.0065 17.4 2.1 3 23 1028 1048 1027 1049 0.94 25 29 0.00012 0.01 16.7 1.9 1 23 1054 1077 1054 1077 0.95 26 29 0.025 2.2 9.4 0.8 2 23 1083 1105 1082 1105 0.90 27 29 0.0019 0.17 12.9 3.8 1 23 1109 1132 1109 1132 0.97 28 29 0.0011 0.098 13.7 0.7 3 23 1140 1160 1139 1160 0.97 29 29 0.0031 0.28 12.2 2.5 1 23 1166 1188 1166 1188 0.97
Sequence Information
- Coding Sequence
- ATGTTAAGTCATGAAAAATTTGAGGGTACATTTTACATTTTAGATAATTTATTTTCAGGTGTAGACGGACCTGCTAAGACCCTAAGTCCTAATACATTGAGGCGGAGGAATCTTCTAATACTATTCAACAATACATCAATTATACCGTTCAAATGCCGTGGAAAATGTCGATGTTTTTATTGCGGTGAAGAGTTGCCCATTTATGATGACCTGAGGAAACATACTAAAGCTCACGGCCCATGTTCAGAGAGAGACAGGGCTATTAAGTTAGTAAAAACCGATGAGGCTGAAGTGAAAATTGACGTGTCCGATATATCGTGCGAATTGTGCAACGAATCGTTTGGGAACTTAGATGAAATAATATCACACTTGATAACAAAACATATGTTTCCTTACGAGAGAGATGTTAAATTGATTATTATGACGTATCGGCTTATCGATAAACGATGTCTCACGTGTGATGAAAGATTTAATCAAGTAAGCGAATTAGTAGTACACGTTAATAACGAACATCCCATGCAATGTTTTGGTTGCGAGGTCTGTCATCAAAAATTTATTAGGAAGCAGTATTTGGACGCCCATATGAGAGTTAAACATTCAAACGTATATAAATGTTTGAAGTGTCCACAGACGTTTCCGTCTCACGTGGCTCTTCAAGAGCACAAGATCAAATCACATGTCGCAGTCTGTAACATATGTTTTACTAAGTTCTCAACGCAAATGAAAAGATTGAAGCATATGAAATCCGAACACGCTAATGAGCCCTTGAAATGTGGATTCTGTTTGAAATTTATGAGCACAAAATTAGGTTTTCTTCGGCACGCTGCTAAATGTACGGAAAAGAACGAAAATGTTAATGAAACTTTTGTAATCGACGACGACGATGAAGACAAGAAACCAACAGTTATACAGATAAGAAAAAATATAGCTTGTATATTTAATATGTCAACGGTGATACCGTTTAAGTATTTTATGAGTAGATTTAGGTGTTTTTATTGTCCGCACGATTTCACTGATTGCGAGGAATTAAGAGCTCATACTGTCATTGAACATCCCATTTGTGATGTTAATTTGAAATGTATGAGGTTGCGTAACAGACAAGAAGGCTGTGTCAAAGTTGACACGTCTGTTCTCTCTTGTAAAATGTGCTTCGAAAATTTGCCAAATTTAGAATCTTTAATAGAACATCTAACATCTGAACATAAGGCTTTATATGATAAATCTGTTGATTGCAATATTCAACAGTATAGATTAATTAAAGATAATTTTCCATGTCCAGTTTGTGGCGAAGCTTATACACATTTTAGCACTTTGTTGAAACATATGGGACAAAATCACACTGACAATAAAAATATTTGCATGCATTGCGGTAAATCGTTTCGAAACTTGCCCAATTTGCGTGTACACATATCGAATCACCACAAAACGTCTGGTAGTTATAAATGCGATAGATGCGACCAAGAATTTTCCACAAATAAATATTTACAAACTCACTTAGGTCGTGCGCACGGTATTAAAGTTTACGAATGTCCCGAGTGTGCGGAAAAGTTTACATCAAATTACGCGATGCAAAGGCATATGATTAATACGCACAGCTCCGGACACAAATGTCTACACTGTGGTAAATTATTCACATCAAACTGTTTCATGATTGATCATATAAAACGGACCCATTTGAAAGAGAAAAATGTCGAATGTCAAGTATGTTACGAAAGGTTTTTCGATACGCAACGCCTAAAGACGCATATGGTTAAACATAACGGTGAACGGAATTTTCATTGCGATATTTGTGATGAAGAAAACAGCCCTGTCAAGAAAACTAGTGCCAATAAATTAAGAAGGCTAAATCTTCAAATATTATTCCACAATACGTCAATAATACCTTTCAAGTGGCGCGGTAAATATTTATGTTTTTACTGCGGAGAAGATTTTAAATCTTATGAAAATTTGAAGGAACACACACAAGATCATGGCGTGTGCTCGGATAAAGATAGGGCTTTACGATTGGTTAAATCTGCGGATGTCGAAGTCAAAATCGATGTATCACAAATTTCTTGTAACATATGTCGTGAGAAGTTCGTAAATTTAGAGGAAACAATTTCTCATTTAGTGGAAAAGCATAATTTGCCTTATGATAGGAACGTGAGTTTGTCAATAGCACCATATCGGTTGTCAGATTTAAGCTGCTTGTTATGTGATGAAAAATTTACTTACCTAAAAAAGTTGATAATTCACGTAAATACTGATCACCCCAGTCGAAATTTGAATTGTGTTCAATGTCAACAAAAGTTCAACAAGACAAGGGATTTAGACGCGCATATACGCACCAAACATAAAAATCATATATGTCCAAAATGCCTTCTTAATTTTCGTACCCTTTCAGAACTTTTAAGCCATAAGAGGAATGCGCATACTTTTAAATGCAATGTATGTAACAGAAGCTTCTCCTCGATAAGTAAATGTTTTAAGCACATAAAAAATGAGCATACAGGAGCTGTGATGAAGTGTGGCTTTTGTTTTACATCCTCAACATTAAAGCAAGATTTTCACAGACACGCTATTAAATGTACGGACTACTGTAAGAAATCTGTTGAAGCAGTGACAGTTGAAGTTGATAAGAAACCGCGCGTTACACAAATACGGGACAACATAGCTTGTATCTTTAACATGTCAACAGCTATACCTTTTAAATATTTTATGAGCAAATTCAGGTGTTTCTATTGTCCAAAAGATTTCAATGAGTGCGATGACCTTAAACAGCATACTATGATCGAACATCCCCTTTGCGATACTAAGCTGAAATCTATGAAACTACGCCACAGACACGACGGCGTTATTAAAGTGGACACTTCATCGTTATCGTGTAAAATTTGTTTCGAAAATATACAAGATTTGGAGTCTCTGATAAAACATTTACATAACGAACATAAAATATATTTCGACAAATCATTGTCTATTAACTTGCAATCGTATAAACTTATAAAAGATAATTTTCCTTGTCCCTTTTGCGGGGATGTTTTTAGATACTTTCGAACTTTGTTAAATCATGTAGTAAAAATGCATTCGGATAATAAGAATATATGCATGCACTGTGGAATGGCTTTTAGGAATTCTCCAAATTTACGAACGCATATCGCACGTCACCATAAGGCTGCTAATTATAAATGCTCTAAATGTGACTTAAGCTTCTTTTCGAATTACTATCTGCAAACTCATTTAGGTCGAGTGCACGGTACGAAGGTCGTAGAATGTCTTCAGTGTCATGAGAAATTCACATCAGTGTATGAAATGCAAAGGCACAAAATAGACGTGCACGGTACAGGCCACGAGTGCTCCTACTGTCATAAGTTGTTCACAGGAAAATCATCCGTCGTCGATCATATCAGACGGACTCATTTGAAAGAAAAGAATGTCGCGTGTACGGTTTGTCAGGAGAAATTTTTCGATAGGCAAAGTTTGAAAGTGCATATGGTGAAACATTACGGTGAGAGGAATTTTCATTGTGACATCTGTGGAAAGAAATTTCTTTGGAAGAAAAATCTTAGAGAGCACATGATGTCACATAACAAGAGTTCGAATAGTCAGTTCTCAAATGATAACTGA
- Protein Sequence
- MLSHEKFEGTFYILDNLFSGVDGPAKTLSPNTLRRRNLLILFNNTSIIPFKCRGKCRCFYCGEELPIYDDLRKHTKAHGPCSERDRAIKLVKTDEAEVKIDVSDISCELCNESFGNLDEIISHLITKHMFPYERDVKLIIMTYRLIDKRCLTCDERFNQVSELVVHVNNEHPMQCFGCEVCHQKFIRKQYLDAHMRVKHSNVYKCLKCPQTFPSHVALQEHKIKSHVAVCNICFTKFSTQMKRLKHMKSEHANEPLKCGFCLKFMSTKLGFLRHAAKCTEKNENVNETFVIDDDDEDKKPTVIQIRKNIACIFNMSTVIPFKYFMSRFRCFYCPHDFTDCEELRAHTVIEHPICDVNLKCMRLRNRQEGCVKVDTSVLSCKMCFENLPNLESLIEHLTSEHKALYDKSVDCNIQQYRLIKDNFPCPVCGEAYTHFSTLLKHMGQNHTDNKNICMHCGKSFRNLPNLRVHISNHHKTSGSYKCDRCDQEFSTNKYLQTHLGRAHGIKVYECPECAEKFTSNYAMQRHMINTHSSGHKCLHCGKLFTSNCFMIDHIKRTHLKEKNVECQVCYERFFDTQRLKTHMVKHNGERNFHCDICDEENSPVKKTSANKLRRLNLQILFHNTSIIPFKWRGKYLCFYCGEDFKSYENLKEHTQDHGVCSDKDRALRLVKSADVEVKIDVSQISCNICREKFVNLEETISHLVEKHNLPYDRNVSLSIAPYRLSDLSCLLCDEKFTYLKKLIIHVNTDHPSRNLNCVQCQQKFNKTRDLDAHIRTKHKNHICPKCLLNFRTLSELLSHKRNAHTFKCNVCNRSFSSISKCFKHIKNEHTGAVMKCGFCFTSSTLKQDFHRHAIKCTDYCKKSVEAVTVEVDKKPRVTQIRDNIACIFNMSTAIPFKYFMSKFRCFYCPKDFNECDDLKQHTMIEHPLCDTKLKSMKLRHRHDGVIKVDTSSLSCKICFENIQDLESLIKHLHNEHKIYFDKSLSINLQSYKLIKDNFPCPFCGDVFRYFRTLLNHVVKMHSDNKNICMHCGMAFRNSPNLRTHIARHHKAANYKCSKCDLSFFSNYYLQTHLGRVHGTKVVECLQCHEKFTSVYEMQRHKIDVHGTGHECSYCHKLFTGKSSVVDHIRRTHLKEKNVACTVCQEKFFDRQSLKVHMVKHYGERNFHCDICGKKFLWKKNLREHMMSHNKSSNSQFSNDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078390;
- 90% Identity
- iTF_01078390;
- 80% Identity
- -