Npol005251.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphalis polychloros
Gene Symbol
-
Assembly
GCA_905220585.1
Location
HG992257.1:5810151-5821052[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.9e-05 0.0069 17.3 0.1 3 23 131 151 130 151 0.97
2 17 7.1e-07 6.3e-05 23.7 1.2 1 23 157 179 157 179 0.99
3 17 4.4e-06 0.00039 21.2 2.7 1 23 185 207 185 207 0.99
4 17 2.9e-06 0.00026 21.8 2.6 1 23 222 244 222 244 0.98
5 17 4.1e-05 0.0036 18.2 3.1 1 23 259 281 259 281 0.98
6 17 2.8e-07 2.5e-05 25.0 1.5 1 23 296 318 296 318 0.99
7 17 0.00013 0.011 16.6 2.8 1 23 324 346 324 346 0.98
8 17 8.9e-06 0.00078 20.3 2.1 1 23 352 374 352 374 0.99
9 17 0.029 2.5 9.2 1.8 1 23 381 403 381 403 0.98
10 17 4.8e-07 4.2e-05 24.2 2.3 1 23 409 431 409 431 0.99
11 17 0.033 2.9 9.0 1.8 1 23 438 460 438 460 0.98
12 17 2e-06 0.00017 22.3 1.5 1 23 466 488 466 488 0.99
13 17 0.00037 0.033 15.2 0.7 1 23 495 517 495 517 0.99
14 17 2.2e-06 0.00019 22.2 1.9 1 23 523 545 523 545 0.98
15 17 0.0016 0.14 13.2 0.3 1 20 551 570 551 573 0.93
16 17 2.9e-05 0.0026 18.6 1.3 2 23 580 601 579 601 0.96
17 17 2.8e-06 0.00025 21.8 1.4 1 23 607 630 607 630 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATTAAGGCTGAGCCTATGAGTTTCTACACACATCCACATATAAATACCGGTCCCCCAACAATAGTCCGTTCAGATTCAAACCATGGTATTATAAATATGAACCAACACCACCCACAAGAAGATTCGAAGGATAGCCTCATAGTACAACAACAAGTACAACACCAACAGGAGCTGCTGGAACAGCACCAACAACACGAAATGCATGATGATGATGTAGACAATCTAAGCTTCAAAGGTATGGAAGATGAAGGGGTTGAAATGGACATGGACGGTCGACAATGTTCTCAGGGTATGGGGGTTGATATGGGGTCAGTTCAAACAAAAATGGAAGTCTCAAATGGAGGCCAAGGAATGCCAAGGTCCAAACCTCAGGCCTGTAAGGTTTGTGGAAAAGTACTTTCATCGGCTTCTTCTTACTACGTCCACATGAAGCTACATTCAGGAAATAAACCCTTCCAATGCACGGTGTGCGACGCGGCGTTCTGCCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACCGGCGAGCGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAGCGCGTGCACACCGATGAGCACATGCGAGCCTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACATACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAAATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCGAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACTTGGAGATACACACGCGCACGCACACCGGCGAGCGACCTTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGTCGGCCCTTCCAGTGTCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAAATACACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGTGACGTCTGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAAAGAACGCACACAGTGCAAGGGCGGCCGTATCAATGCATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACTGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACACTCAACATTCACAAGCGCATTCATACCGGGGAACGTCCATACGCATGTGATATTTGCCAAAAACGATTTGCAGTCAAGAGTTACGTAACCGCACATAGGTGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGGCCGTGCTACGAGTGCAGCGTCTGCGGACGGACCTTCGTCCGCGACAGCTACCTCATACGGCACCACAATCGGGTGCATCGCGAGAACCACAGCAACGTGTCTGCGAATAGTATCGGCACTATCAACAGCGTGGCCACTAACACGAACAACTCAAACAACGGGAACTACGACTCGCCCGGTGTTTGCGATTTAAGTTTCGTGCCAATGGTGAACCGCTACATGACGTCTCAGGGCACACAGGTGTCGATGCAGGACTCGCAGAGTAAAATGTCCGCCATGTCGCCACAGTCCATCGCCTCGATTTCGTCGCCGCCGCCGCCGCACACGCCCACGCCGCAGCCCATGCCCGCGCTGCGCCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHINTGPPTIVRSDSNHGIINMNQHHPQEDSKDSLIVQQQVQHQQELLEQHQQHEMHDDDVDNLSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQGMPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPMPALRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01508242;
80% Identity
-