Npol005960.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992271.1:2433731-2434222[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.1e-08 6e-05 23.2 0.0 1 38 18 55 18 59 0.90 2 3 3.7 3.7e+03 -1.8 0.0 5 12 67 74 64 79 0.83 3 3 1.9 1.9e+03 -0.8 0.1 30 45 130 145 130 145 0.80
Sequence Information
- Coding Sequence
- ATGTCTTCGCGAAGACGAAGAGTTCTCGGGGCGAAACCCTACCGAAATTATAGTGAGGACACTTTGAAAGCTGCTATGGCAGCAGTTGACACTGGCATGACTTTGAGGGAAGCGGAAGAAAAATTTAAAATACCTCGAGCAACTTTAAATAGAAAACATCGAAGGCTACAATTAAACAAAGTCGGCCGTCCTAAAGTTTTCAGTGAAGCTCTGGAGGAAGTCTTTGTGCAATCAATCATTACAGCTGCTGCTTGGGGATATCCACTATCAGGTTTAGACCTATCTTTACTCGTGAAATCACATCTAGATAGGCTAGGTCTAAATGAGACACGTTTCAAAGGTAACTTACCGGGACGATATTGGCTGGAAGGTTTTCTACGGTGCCATAAAAGCACTTTATCTGTAAGGCTCTCAGAAAATATTAAACGCCAAAGAGCTGGAGTTACGCAGGAGACATTAAAATCATACTTCCAAGAATTAAAAACCACCTAG
- Protein Sequence
- MSSRRRRVLGAKPYRNYSEDTLKAAMAAVDTGMTLREAEEKFKIPRATLNRKHRRLQLNKVGRPKVFSEALEEVFVQSIITAAAWGYPLSGLDLSLLVKSHLDRLGLNETRFKGNLPGRYWLEGFLRCHKSTLSVRLSENIKRQRAGVTQETLKSYFQELKTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367831;
- 90% Identity
- iTF_01153888;
- 80% Identity
- -