Npol012345.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992241.1:14399053-14406373[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-11 8.6e-08 32.3 0.0 4 35 91 123 88 128 0.92
Sequence Information
- Coding Sequence
- ATGGATAATGCAGAAGCGGTGCGGCGATGTTCGGCCACACTGCGGGCGGCAGCGGGGACGGACTCGACTTCGCCTCGGAGAGCCGAGATGGTCCAGTGGAAAGAAATCGTAAATCCTAAGCGAGGGTGGAGGATGGAGAGATCACAGATCACAGAGTTCTACGCAAAGTTGCTTGAGAACTCTCACGCTTGGCTCGGTGCCTCTACATCTTCGATTGCAGAATTCCACGGTCATACACTCAAGCTGAAAGCTCCCACATGGACGCAGAGTCAACTTCAAGAAGCAATACAAGCAGTCGTGACGCAGCGAATGAGGTTTACGCAAGCCGCTACACACTATGGAATACCCAAAGGGACTCTGTACGATAATATATTAGGAAAATCGAAAAGAATGGCAGTACTCGATGAAGCGGGGCTACTCAGTAGCGAGGAAAGAGCGGTTGTAGACTTCTGTTGCGAAACAAGTGTCTCACCCTATAATAGGCGAACTAAAAAATCACTAGCCGAAGTTCTTGCTTTCGTCGAGAAACTGAGACGAAGCAGGGATCCGAGTTTTGTGTTCATAGGTCTCACAGGTTTTAGATGGTGGTGGGCATTCTGTAAAAAGCACTCTATAGTGTCGCTCTATTATGACGGTTCAACTAAAACTAAAAGTTCTAAAGTTAAAACTGAACACCATACCGATGACGAATCTTGA
- Protein Sequence
- MDNAEAVRRCSATLRAAAGTDSTSPRRAEMVQWKEIVNPKRGWRMERSQITEFYAKLLENSHAWLGASTSSIAEFHGHTLKLKAPTWTQSQLQEAIQAVVTQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEAGLLSSEERAVVDFCCETSVSPYNRRTKKSLAEVLAFVEKLRRSRDPSFVFIGLTGFRWWWAFCKKHSIVSLYYDGSTKTKSSKVKTEHHTDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506277; iTF_01507998;
- 90% Identity
- -
- 80% Identity
- -