Npol018048.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992270.1:754286-759430[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-13 9e-10 38.6 0.0 3 38 16 51 14 56 0.93 2 2 0.33 3.2e+02 1.6 0.0 22 39 175 193 175 195 0.87
Sequence Information
- Coding Sequence
- ATGTCTGCATCTCATAAATACAGCAAGAGAAAGAAGTGGGAGAAGGAGGATATGTCCGCTGCGATTATCGCTGTACAAGAAAAGAAAATGGGATACTTGAAGGCAGCTAAACACTTTAACGTTCCCAGGTCTACCCTCTTTCGATTTGTGAATGACAATGACTCTTCGACTGAATCTGTACTTAATAAAGTTATTGGTCGAAGGCCAGTTTTGGGTACAGATATTGAAAAGATGCTGGTTGAATATATATTATCAATGGAGAATAAATTTTATGGGCTGACCAGAATGGATTTGCGTCGGTTGGCATATCAATTAGCTACAAAAAATAATATACAAAACGCTTTTAGGGATGGATTTGCTGGAAGATACTGGCTGAAGGGATTTTTAAAACGACACAAGGAAATTTTGTCCTTAAGACAGCCAACTGGAACTTCTCAAGCAAGGGCCAATGGATTCACTAAAGAAAGAGTGGACGAGTTCTACGACAACCTAGACAAAATCCAGGCTGATAAGCCTTTCCCTGCTGCGCGCATATTCAACGTTGATGAGAGTGGTCTCTCTATACGGAGCCTTCAGGGGGCGAAGGTAATCTCGCCCTCCGCACTCCTCGCTAGTGCGTACGGCAGCGCGAGGCCATTCGGGCTGCCGTCCTTTTCAGGGCCGTTTGAATTTGGAAACGTGAAGCCCCCACCTCACGCATCCACGGTCTCAGGGTTACGCCCTATATTTAAAGCCCCGGACGTTGGGGCTGTGGGAGGGCCGTGA
- Protein Sequence
- MSASHKYSKRKKWEKEDMSAAIIAVQEKKMGYLKAAKHFNVPRSTLFRFVNDNDSSTESVLNKVIGRRPVLGTDIEKMLVEYILSMENKFYGLTRMDLRRLAYQLATKNNIQNAFRDGFAGRYWLKGFLKRHKEILSLRQPTGTSQARANGFTKERVDEFYDNLDKIQADKPFPAARIFNVDESGLSIRSLQGAKVISPSALLASAYGSARPFGLPSFSGPFEFGNVKPPPHASTVSGLRPIFKAPDVGAVGGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -