Basic Information

Insect: Nymphalis polychloros
Gene Symbol: ct
Assembly: GCA_905220585.1
Location: HG992260.1:9721276-9725417[-]

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.7e-32 3.2e-28 98.1 0.0 4 77 340 414 338 416 0.96

2 2 5.6e-31 4.9e-27 94.3 0.0 3 75 543 616 541 620 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.7e-32	3.2e-28	98.1	0.0	4	77	340	414	338	416	0.96
2	2	5.6e-31	4.9e-27	94.3	0.0	3	75	543	616	541	620	0.95

Sequence Information

Coding Sequence: ATGCAATTAAGTCTTTGTGATCCGAAAATTAATACGATACATCTTGAAAGGCTCCCTTCTCGGATTGGGACAAAAGATGGTTCTGCGGGTACAGGGTTTGGGAGGCCGGAGGGCGAAGGGGACGAGCGCCTCGCACATATGCTCAACGAGGCCTCCCATATGATGAAGACACCTTCAGGTCAGCCTAACAATGATGACTCCAGGAGCAATGAAGACTCCAGCTCACCGAGAACACAGTGCCCTTCACCTTTTTCTAAGGATTCCAGCCAAAACAGAAGGCTAAAAAAGTACGAAAATGATGACATTCCCCAAGAGAAGGTAGTCCGTATATACCAAGAAGAACTGGCAAAAATTATGACCAGAAGAGTCGAAGATATGCGTCACAACCGTGATGGCTTCCCTGGTGTGTTTCCTCCTTTTTTTAGCGGCGGCATGCCTCCGCATATGGAGAGGCCACCAGAGGACATACGCATGGCCCTCGAAGCGTATCACCGAGAACTTGCCAAAATTCAGCCGGGTGGTAACATTCCAAACCTTCACAATATGCCTGGAATGCCACCGTTTCCTAATCTCCTCGCTCTGCAGCAACAAGCTATGCAAGCGCAGAACCAACACATGAACGGGTCTGGAGCGGTTCAAGATCTCTCCTTGCCCAAAGATAAAAATACCAAAATAAATGGAATGACTGATAGTGATAAGGATAGATCTATGGACGCAGAGGAGGCTATAAGGCACGCTGGAAGTGCTTTCTCATTAGTTAGACCAAAATTAGAACCTGGACAACAATCGACGGGATCGTCAGCGTCCAGTCCGCTTGGCAACGCGATACTCCCTCCAGCGATAACTCCAAACGATGACTTCAGCAATTCCGCTGCTGCTAGTCCATTACAACGAATGGCATCGATAACAAATAGTCTTATATCACAGCCTCCGAATCCACCTCACCACGCGCCACCACAACGATCGATGAAAGCCGTTCTTCCACCAATCACACAGCAACAGTTTGATCTCTTTAATAACTTAAACACGGAAGAAATCGTCAAGAGAGTTAAAGAAGCTTTAAGCCAGTACTCTATAAGCCAAAGACTGTTCGGTGAATCCGTGCTCGGATTATCACAAGGATCTGTCAGTGACTTACTAGCGAGGCCGAAGCCTTGGCACATGCTAACACAAAAAGGGAGAGAACCATTTATCCGAATGAAAATGTTCTTGGAAGACGACAACGCTGTACATAAATTGGTTGCATCTCAATATAAAATAGCCCCAGAGAAGTTAATGAGAACCGGAAATTATAGCGGAGCTCCTCCTTGTCCGCCAAACATGAACAAACCGATGCCGCCAACTCAGAAAATGATCTCAGATGCAACTTCCTTGCTCAGCAAAATGCAACAGGAACAGCTTCTTAGTTCTGGTCACTTAGGTCACCTTGGCCAGCCCACGCCCCTCCTTCTCACACCGCCTGGGTTTCCACCCCACCATGCGGTTACATTGCCGCCCCAACACCACGACAACAACAACAAAGAAAGGAAACCACCACCGCCACCACAACCGCACCACCAACCACCGGTAATGCGCGGCCTTCATCAACACATGTCTCCCAGTGTATACGAGATGGCTGCATTGACTCAGGATCTCGATACGCAAACAATCACGACAAAGATAAAGGAGGCCCTTTTGGCGAACAATATCGGGCAGAAAATATTTGGCGAAGCTGTGCTAGGTCTGTCCCAAGGATCCGTCAGCGAGCTTTTATCGAAACCGAAACCCTGGCACATGCTAAGTATCAAAGGCCGAGAACCATTCATAAGAATGCAACTGTGGCTAAGCGACGCTCACAACATCGATCGTCTTCAGGCCTTAAAGAACGAGAGGCGCGAAGCAAATAAACGGCGAAGATCGAGCGGTCCCGGTCAAGATAATTCATCAGATACGTCATCTAATGACACTTCAGAATTTTATCATTCGAGCTCACCCGGGCCCACTTCGGGCGTTCCGTCTGCAAAAAAGCAACGGGTTTTATTTTCCGAGGAACAAAAAGAGGCTCTTAGACTAGCGTTCGCGCTCGATCCTTACCCGAACACTCCCACCATCGAGTTCCTAGCGGCGGAACTAGGACTATCAACCAGAACGATAACGAATTGGTTCCACAACCATCGCATGCGACTAAAACAGCACGCACCGCACGGCTTGCCGGCCGAACCACCGGCACGAGATCAGTCTGCGGCACCCTTTGACCCTGTTCAGTTTAGACTCCTCTTAAACCAGAGGCTACTTGAATTGCAAAAAGAGAGAATGGGCCTTGCCGGTGTCCCGCTTCCGTACCCTCCTTATTTTGCGGCAAACTCAAATTTTGCGGCTCTTATAGGGCGAGGTCTGCTACCTCCCGAAGAGCGCGTTAAGGATCCAACCGGTGGCCTCGACCTTTCGATGCCTCTGAAGCGCGAGCCCGATGGCGACGATTTTGAAGACGACGACGTAGAGAGCAACCTCGGCTCAGATGACTCGCTGGACGAGGAGTCAAAGAACGAGCCGAAGGCGGCGTCGACGCCCGCCGGTCGTTCGAGTCGAAGGAAACCGGCGGCGCCGCAGTGGGTAAACCCCGACTGGCAAGACGAGAAGCCACGAAATCCGGACGAGGTGATCATCAACGGCGTGTGTGTGATGAGAAGCGACGACTTCCGGCGTGAAGCCGAAGAGACGGTACTCGTGGAGCCGTCGCCTGTGCCTCGCGAGCCCTCCCCTGCCGCCTCGCCCGCCTCGCGCGCCTCACGCGCGTCTCCCGCCTCGCTAGCGTCGCACGCGCGCAGTCTCGCGCGTACTCCCGACGTGCTGCCCGAGGACAAGATCAAGACCGAGGCGGAAGACGACCGATGGGACTACTAA
Protein Sequence: MQLSLCDPKINTIHLERLPSRIGTKDGSAGTGFGRPEGEGDERLAHMLNEASHMMKTPSGQPNNDDSRSNEDSSSPRTQCPSPFSKDSSQNRRLKKYENDDIPQEKVVRIYQEELAKIMTRRVEDMRHNRDGFPGVFPPFFSGGMPPHMERPPEDIRMALEAYHRELAKIQPGGNIPNLHNMPGMPPFPNLLALQQQAMQAQNQHMNGSGAVQDLSLPKDKNTKINGMTDSDKDRSMDAEEAIRHAGSAFSLVRPKLEPGQQSTGSSASSPLGNAILPPAITPNDDFSNSAAASPLQRMASITNSLISQPPNPPHHAPPQRSMKAVLPPITQQQFDLFNNLNTEEIVKRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGNYSGAPPCPPNMNKPMPPTQKMISDATSLLSKMQQEQLLSSGHLGHLGQPTPLLLTPPGFPPHHAVTLPPQHHDNNNKERKPPPPPQPHHQPPVMRGLHQHMSPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREANKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPTSGVPSAKKQRVLFSEEQKEALRLAFALDPYPNTPTIEFLAAELGLSTRTITNWFHNHRMRLKQHAPHGLPAEPPARDQSAAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNFAALIGRGLLPPEERVKDPTGGLDLSMPLKREPDGDDFEDDDVESNLGSDDSLDEESKNEPKAASTPAGRSSRRKPAAPQWVNPDWQDEKPRNPDEVIINGVCVMRSDDFRREAEETVLVEPSPVPREPSPAASPASRASRASPASLASHARSLARTPDVLPEDKIKTEAEDDRWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01401167;
90% Identity: iTF_00642229;
80% Identity: iTF_01079784;