Basic Information

Insect: Nymphalis io
Gene Symbol: ush
Assembly: GCA_905147045.1
Location: LR989898.1:1813684-2036369[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0049 0.45 11.6 0.2 1 20 123 142 123 144 0.94

2 8 7.4e-05 0.0067 17.3 0.9 1 23 181 203 181 203 0.98

3 8 0.13 12 7.1 0.8 3 20 234 251 233 253 0.92

4 8 0.037 3.4 8.8 4.2 2 21 491 510 490 511 0.95

5 8 0.005 0.45 11.6 0.2 3 20 540 557 538 559 0.90

6 8 0.0072 0.66 11.1 1.3 1 23 614 636 614 636 0.99

7 8 0.0093 0.85 10.7 0.3 1 23 673 696 673 696 0.96

8 8 0.42 38 5.5 1.1 3 20 729 746 728 748 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0049	0.45	11.6	0.2	1	20	123	142	123	144	0.94
2	8	7.4e-05	0.0067	17.3	0.9	1	23	181	203	181	203	0.98
3	8	0.13	12	7.1	0.8	3	20	234	251	233	253	0.92
4	8	0.037	3.4	8.8	4.2	2	21	491	510	490	511	0.95
5	8	0.005	0.45	11.6	0.2	3	20	540	557	538	559	0.90
6	8	0.0072	0.66	11.1	1.3	1	23	614	636	614	636	0.99
7	8	0.0093	0.85	10.7	0.3	1	23	673	696	673	696	0.96
8	8	0.42	38	5.5	1.1	3	20	729	746	728	748	0.93

Sequence Information

Coding Sequence: ATGTCGCGAAGGAAACAGAGCAATCCCAAGCCTTTAAAACGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCAATGCCAGGAGAACCGCGCACGCCGAGCTCGGGTGGAGAGCGAGCTGCTTCGAGTGGTGGAGCTTCACCTACTTCCGAGGGATCCGCTACCGCATCTCCACCCCGCCTACGCCTTAACGCAAGTCTAGCTACCGATCCAGCGCTTGCACCTCAAGCAACGACACTAAAGCATGAGCCACCCTCGCCGTCTCCACCGCCTGCTCCAGCACAGCAAGCGAGAGATTACGGCTTAGCTCTTACGGCGGCTAACTTTCCAGCACTGTTTCCCGCAGCCACCGTGACTCCGCCCGGTTACATGTGCAAGCCTTGTGGAATACGCTATTCTTCACTGAGTACGCTCCAAGCACATCAAGAACACTATTGTTCAAAACGCAGAACGAAACCCGATGGTACTGAAACACCAATAGATGCAGCGGGTGATGAGTCAAGCGGTGATTCCAAAACGCCGCGACCACTCGGCAAACAATATGCGTGCACATATTGTTCGTACAGCGCCGATAAAAAAGTCAGTTTAAATCGTCATATGAGAATGCATTCCTCATCACCGGTAAGCAGTGGGACTCCAGTACCACCACCCACATCAAATGGCGAAACTGCAGAAGGTCCACCTGCTCAAGATCGATATTGTGTAGATTGTGATATTCATTTTAGCTCAGTTAAAACATACCGAGCTCATAAAGCTCATTACTGTAATACCAGACAAGTTGTCAAACAAGCATTGGCAGCGGCCAGGGCGGGATCTGCAACATCGGGCTCCGCGCCACCGTCTCCTGGGGCAACTCCTCCTGCTCAAAACCAATATGCATTAGCTTTGCCAACAAATCCGATTCTCATAGTTCCATATTCAATTTTAAGAAGTGCTAGCACACTTCCAGGTACTACATTACCAGATCCAGATACGCCTTGCTTTTTATTACCAAATGGAACATTTCAACCCATTAGTCGAGCGTTGCCGAATATGAATCCAGAAGTAAAAGAACCTGAAGTTTTGAAATCGGCTAATAGACCACGAGAGCCATCTCGAGATGGCGCCACACCTTTAGATCTGAGCGTTCGTCGATCTCCGGAATCTGTTACAACTGATGAACACGAAAAGGAGAACCGGATGCGTTCTACGACCCCGGAACAAATAGTTTGCGCTCCATCGCTACCAGGATCTCCTGGTACTCCATCTCCTTCTAGAAGATCTTCTTCGCCTAGTGGAGAAAATTCACCTAAGAGACGCCGTCGTAATTCAAGAGGACCCACTCCTAAGCCACCAAGTGTGCCTTCTCCTCCAGAAGAAAAATTTACACCAGTTGTCCCTCCTCCGATTTTACCCCCTGCTTTGGCTTTACGACTAGCGACAGAATTACCCGTAACGTCACCACAAGTATTGGTTAAACAAGGAGTATCAAAATGTAAAGAGTGCAATATAGTATTCTGCAAATTTGAAAACTATCGTATACATAAACGTCACTACTGCTCTGCTGGTGGAGGGGAAGAAAGAGCTAGTCCAGCACCACCGGAGCCTGGTCCACCACCACAGTACCGCCAACTTATCTGCTTGGCGTGTGGAATACACTTTAGTTCCCTAGATAATTTGACCACTCACCAATCATATTACTGTACGAAAAGAGAGACTCGATCGCCTCGAAGCATTCCTGAAGTGCCGCGACCTGCTTCAGGATCAGACGGTGGACGGAAATGTCCATGTTGTGAAGTAGTGTCTCCCACGACGGCAGCAGCGCAACGCCATTTGGAATCACATGCCGGTGTCAAAGCGTTCCGCTGCACGATTTGCCGATACAGAGGAAACACGCTACGTGGTATGCGTACTCATATACGCATGCATTTCCGCGACAAGCCGGCTGATCTTCATGAGGAGAACTACATCTCTTGTATACAGGAAGAAGATAATCGGGAGACAACATCTCCAAACCCAGCGGTGGGCGAGCGAGTCTACCGGTGTGGGTCCTGTGCCTACACGTCTTCATACCGTGGCAATCTTGTAAGACACGCGCGTCTTGTTCACGCCACCGAAGACCCAGAACCAGAAGAGCAAACATCTCCCATCCCTCCCGCTGATATTAAGAAAGAACCAGAAACAGACGAAGATACTCCTAACTTCTGCAAATCCTGCAACATATCTTTCAAGTACGTCAACACGTACAAAGCACACAAACAGTTTTATTGCACTGCTGCTAATCAAGACGCTGCTGCCAACAATAATGTCCCAGCAAGGGTCAACGATGCGCCTGTTGTATGA
Protein Sequence: MSRRKQSNPKPLKREDEEWGNESEAMPGEPRTPSSGGERAASSGGASPTSEGSATASPPRLRLNASLATDPALAPQATTLKHEPPSPSPPPAPAQQARDYGLALTAANFPALFPAATVTPPGYMCKPCGIRYSSLSTLQAHQEHYCSKRRTKPDGTETPIDAAGDESSGDSKTPRPLGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPVPPPTSNGETAEGPPAQDRYCVDCDIHFSSVKTYRAHKAHYCNTRQVVKQALAAARAGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSILRSASTLPGTTLPDPDTPCFLLPNGTFQPISRALPNMNPEVKEPEVLKSANRPREPSRDGATPLDLSVRRSPESVTTDEHEKENRMRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSGENSPKRRRRNSRGPTPKPPSVPSPPEEKFTPVVPPPILPPALALRLATELPVTSPQVLVKQGVSKCKECNIVFCKFENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRSIPEVPRPASGSDGGRKCPCCEVVSPTTAAAQRHLESHAGVKAFRCTICRYRGNTLRGMRTHIRMHFRDKPADLHEENYISCIQEEDNRETTSPNPAVGERVYRCGSCAYTSSYRGNLVRHARLVHATEDPEPEEQTSPIPPADIKKEPETDEDTPNFCKSCNISFKYVNTYKAHKQFYCTAANQDAAANNNVPARVNDAPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00825178;
80% Identity: -