Nio002128.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989923.1:1765519-1798514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2 3.9e+02 2.3 1.6 2 19 467 484 466 488 0.87 2 13 0.018 1.6 9.8 0.0 1 23 498 521 498 521 0.95 3 13 0.052 4.7 8.4 3.0 1 21 655 675 655 676 0.94 4 13 0.044 4 8.6 4.3 2 23 736 757 735 757 0.95 5 13 1.8 1.6e+02 3.5 0.2 2 10 800 810 799 815 0.89 6 13 0.0013 0.12 13.4 4.1 1 23 821 843 821 843 0.98 7 13 0.053 4.8 8.3 0.2 1 23 952 974 952 974 0.97 8 13 1.8 1.6e+02 3.5 7.2 1 23 981 1003 981 1003 0.95 9 13 0.0012 0.11 13.5 1.8 1 23 1038 1061 1038 1061 0.95 10 13 0.55 50 5.1 0.4 1 13 1068 1080 1068 1081 0.91 11 13 0.12 11 7.2 0.0 3 23 1087 1107 1085 1107 0.94 12 13 0.00022 0.02 15.8 0.1 1 23 1113 1135 1113 1135 0.98 13 13 0.00012 0.011 16.7 1.1 3 23 1143 1164 1141 1164 0.95
Sequence Information
- Coding Sequence
- ATGGAAGACTCGCCACCATTAATCCTTTGTCTGGAAAATACAAATGGCGAAGAAGTTGCATTAAAGATTGAACCACATGATACTTTTAAAATATTTCTGGATAAAGCCAAATCTCTTCTAGGCTATGACGTCGATTTAAACGCTATAACAGGCAACCAACCGGTCAATCTTGAAGAAAGTGCTTACACTTTCCTTTTGAATGCAGAACAAAATCTTCCAGATACAAATTTCAATCCAACAAATTACGAACATGATACTAAAGATTCTGACGACCTAGTCTACGTCTTAGACGATGGAACACAAATACGTGCCTCTCAAATACAATTCGATAATGAAGATCCCCTCACAGATCTAACAGCTGAGAACATACCATTTGTTAAATATACAGATTGTCCAGACGAAAATGAAATAAACGATATAGAGATTCGTACTATAAAAGACATCAATATAGTCGAAAGTCCCATAGCTAATAAAAACTTTAGCCCGAAAGGTAATTTTGCGAATAGCCTCCCTTTTAAACTCGTCTGTAACAACATTTCAAATTTCGAAGCGCAGTTCGCTAAATATCTCGAGTCCAGTGCGAAAGTGTTTGCGGCAAACTCTGCTATTAAAAACAAATCGCCTAGAAATGTAGATGATTTTAAAAATAACGATAAAACATTAAAAGATAATAACAGCTTTTACACACGTGAAGAAATACTTAACATGTTTAAAGATTCACCCGTGACCCCTCTACCGTGTGAAGACAATCAAAGCTATGAAACGCGTAGACACGTGCGGAAAACTGATCCTTCGAGACTTGTGTATAAGGGTTGGAATGCCAAACCAGTTATAGATCTAGATTCAGCTATCAACAAACATGATTGTTTCATATGCTGTAAAAACATCGAAAGCAGTGAAAAGTTATATTTATTTGACAAAGAAGATCAGATGTTGCATCGTTGCGAACAAAGGAAATATATGACACAGCTTAAAATTATTTGCGAGAAGTGCTTAGGGGAAAACTTTAAACCGAGCCGAATGAAAAGTCCGAGTCAATCTTTGAACAACGACGAATACTTGGTCATAAAAAACAATCAGCAATATATTTTCCAAAAAACGTCATCAATAAATTTCAATAATAACATTTACAATACAGGAAAAGTAGAAGGTTCTAGAAATAAAGAAGAGTTCGTTAAAGTAGAGATCGGTCCAGATGGAGAAATTATAACGAAGCTAGTTGATAACGTAAGAGTGGACGATATGACGATGGTGAAAGACGAGAAGAAAGGCAGCTCGAGTGATATCGAAATAATAGAGCCGGAAACGGAAATCGATATAGAGAACATTGAAGATGAAGACGTTAAGGAATTCTTGGGGAAGTACCAACGTGATGGTAGTGTTGATGCAGAGGAATTAAAATGCAGATTTTGTAATCGAGAATTCAAGGAGTTATCAGAAATATTGGAACACTGTGAAGATCATAAACACGATCTCGACGATGGTACCGTTTATCCATGTCTGCTATGTGATTATGGATATGCCAATCTGAAATGGCTAAAAGGTCACATAAAAGCTGCTCATGGAAAACAGAATAAAGGAAATGATGATGCAGAAGTAAATAATGATGAAAAAAATGGTGCAAACAGCTCGCCGGTCGCGAAACGAACTCGCAGCGCTATTAAACGCAATGACGTTGAAAATGACTCTGGTTATTATTTAAATCCTCTTTTATGTCCTATCCTTCCTTTTTTATCTAATTGGTCACCAGATGGTAAAGAAGAAAATCAGAATTCTGAAAATAATAATGGAAATGAATCGATAGAAGATCGAACGTTCACAACGGAAGTTAAACAAGAGTGTATAGACAGCAGCGACGATTCGATATGGATCGTGCAAACCGGCGACGATGACGTCACCGAACAGCTAGAGAAATTGCTAAAGGTCAATGAAGATGGTCGGAATTATGATGAGTTGAAGAAACATAAGTGTTTTAATTGCAGTCAAATATTTCCATCGGCCGACTCACTAACAACTCATAAATGTAGAAAAAGGAAGCAGAAGTCGATCTTAAATGATTCTGTTGTCTACGTGCCGTCCGAGGAGGATTTTTTAAAGAGAGCTCAAGGAAAACCTCGTTCACTTGAAGAATCTGGTGACAACGATCTTTTAACTGTGCGAGGCCGTAAGAAAAAGAGTCCCGAAAAAACGGACTCGCAGATCATGACTTGTCACAATTGCAACGAATCGTTTACATCCAAAGTGAGACTTAAATTTCACATGCAATTCCACGAAACACCGAATCTAATAACGTCGGACGGTCAGTACGCATGCACGGAGTGCGAGAACGCCAAGTTTGAAACGGAGACCGAATTGTTCGACCACGTGCATTTCCAACACGACAAGCAGAAACGTTGGCAGTGCCCGGTCAAGGGCTGTGGAAAGACTTTCTTTTTAAGGCAAGATAACTTCATAAAACCGTTCCAATGTCACATATGCTTCAAACAACTGACCCGGCGGTCTCGTCTCCGGATGCACTTACGGGCTCACGAGGAGGAACTGTCTCCAGCGCTTGTGTTGACCTGCGCGATGTGCTGCAGAGCGTTCAGGGACGAAAACGACGCACAGGAGCATGCAAATAAGGCAACGGAGTGTATAGACGAGTTTACTAAGGAACTGAAAGAGGAAACGGAAGCCACGGAACAGCTGTCACCAACGAGTGGCATCGTCAGACACGCCGTCCGAGTTAATGAATATCCGCGTCTCACGAAAGGAATCGAGCGTGAAGTGAAAAATGAACAAAGCGAAGCTCTATTGGCAGGCTTAGACGACGCAGCGAGAAATATTATACGCGTTGTCAATATTGAAAAGGCGTTTAGATGCGAATATTGTGAAGACGTATTCTACATGGAGAATGCTCTTAACAGCCATAGAATAATACATAAAGGAATTAAAAATCCCTTTACGTGTCACATCTGTAAAGTATCTTTCGCTACATATTCTAGGTGTACGACACACAAAACGACCCACGGTTTTTACAAGCGCAGCACAGCTGAAGGTCGTAATGAAGGTACCGCTGGACCTGCCACCGCTGGGATTCTCGGCTACGGTGGTTTTCCCGTTGTGAAACACTTTTTATGTGAGGACTGCGGTCGCTCGTACCTTCACTGGACGTACCTCCAAGTGCATCGTCGTATGAAACATGCGAACGAAAATTATATTTTCAAATGTAATCAGTGTGAAATGACGTTTCCTAACAGGGAGGTGCACGGCTGGGCGTGCCCCGTGTGCGCGCGCGCGTTCCGCTCGTCGTCCGTGCGCGACGAGCACGTGCGCGTGCACACGGGCGAGCGGCCCTACCCCTGCGACGTGTGCGGCGTCGCCTTCCGCAGGTTGACAGCCATGCGCAACCACAGATTGATCCACACAGGGGTCCGCGTGTGGGCGTGTACGAGATGCCCTAAGCGTTTCAGGATTAAGTCCGATTTGAGAACGCATCTAAGACTGAAGCATCCTTCGCATTTAGTTGTTATTGAGTTGGAAGGAACGAATTGCAATCCTGAAGATATAACGCAACACCTAGCCCTCAACGACATAGCTGAAGAAAAGGTCATCGAGATAACGATGATCACCTTCGCGAAGGACTCGAGAAATATTGTACCAAATTCATCGCGCGCTCTTTCGCTACTGAATGACGTTCCGAGAACCCAAATAATAGGGGAGAAACTACCAGAACCCACTGATATGGTACATTCGTTCCTACAGTCCAGACGCGGCCGTGGTATCGCTAAAACCCAAAAACCAATCCAACAGCATCAGAGTCGAGAATATTCCCTGAACATGAACGTTGATAATGACACCGATTTTGGCCACGGCGGCCAATCTCAAGAGAGATTAGCCAACTACGCAAGAGATATTATAGTGCATAAGTTTGTGCGCAAACACAGATGCACTCTCTATTCCCTAACTCTCATAATCCGATGCGACGGCAAACCGACACGACCGAAAAGAGTTCAGGCGCAGAACCAACAGCTTTATGTGCTTTCAGAGGCACGGGAGTACACACACAGTTCCAGACTCCGGGCTGCTACTGCGAATTTTCTGACAGAAAAACCCAATAACTTTTTATTGGCCTGA
- Protein Sequence
- MEDSPPLILCLENTNGEEVALKIEPHDTFKIFLDKAKSLLGYDVDLNAITGNQPVNLEESAYTFLLNAEQNLPDTNFNPTNYEHDTKDSDDLVYVLDDGTQIRASQIQFDNEDPLTDLTAENIPFVKYTDCPDENEINDIEIRTIKDINIVESPIANKNFSPKGNFANSLPFKLVCNNISNFEAQFAKYLESSAKVFAANSAIKNKSPRNVDDFKNNDKTLKDNNSFYTREEILNMFKDSPVTPLPCEDNQSYETRRHVRKTDPSRLVYKGWNAKPVIDLDSAINKHDCFICCKNIESSEKLYLFDKEDQMLHRCEQRKYMTQLKIICEKCLGENFKPSRMKSPSQSLNNDEYLVIKNNQQYIFQKTSSINFNNNIYNTGKVEGSRNKEEFVKVEIGPDGEIITKLVDNVRVDDMTMVKDEKKGSSSDIEIIEPETEIDIENIEDEDVKEFLGKYQRDGSVDAEELKCRFCNREFKELSEILEHCEDHKHDLDDGTVYPCLLCDYGYANLKWLKGHIKAAHGKQNKGNDDAEVNNDEKNGANSSPVAKRTRSAIKRNDVENDSGYYLNPLLCPILPFLSNWSPDGKEENQNSENNNGNESIEDRTFTTEVKQECIDSSDDSIWIVQTGDDDVTEQLEKLLKVNEDGRNYDELKKHKCFNCSQIFPSADSLTTHKCRKRKQKSILNDSVVYVPSEEDFLKRAQGKPRSLEESGDNDLLTVRGRKKKSPEKTDSQIMTCHNCNESFTSKVRLKFHMQFHETPNLITSDGQYACTECENAKFETETELFDHVHFQHDKQKRWQCPVKGCGKTFFLRQDNFIKPFQCHICFKQLTRRSRLRMHLRAHEEELSPALVLTCAMCCRAFRDENDAQEHANKATECIDEFTKELKEETEATEQLSPTSGIVRHAVRVNEYPRLTKGIEREVKNEQSEALLAGLDDAARNIIRVVNIEKAFRCEYCEDVFYMENALNSHRIIHKGIKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSTAEGRNEGTAGPATAGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENYIFKCNQCEMTFPNREVHGWACPVCARAFRSSSVRDEHVRVHTGERPYPCDVCGVAFRRLTAMRNHRLIHTGVRVWACTRCPKRFRIKSDLRTHLRLKHPSHLVVIELEGTNCNPEDITQHLALNDIAEEKVIEITMITFAKDSRNIVPNSSRALSLLNDVPRTQIIGEKLPEPTDMVHSFLQSRRGRGIAKTQKPIQQHQSREYSLNMNVDNDTDFGHGGQSQERLANYARDIIVHKFVRKHRCTLYSLTLIIRCDGKPTRPKRVQAQNQQLYVLSEAREYTHSSRLRAATANFLTEKPNNFLLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01080988;
- 90% Identity
- -
- 80% Identity
- -