Basic Information

Insect: Nymphalis io
Gene Symbol: -
Assembly: GCA_905147045.1
Location: LR989921.1:2848930-2857209[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.063 5.8 8.1 1.0 3 23 294 315 292 315 0.94

2 8 0.026 2.4 9.3 0.1 1 23 320 342 320 342 0.98

3 8 0.0041 0.37 11.8 1.2 1 23 346 368 346 368 0.96

4 8 0.0057 0.52 11.4 1.0 1 23 381 404 381 404 0.92

5 8 0.00036 0.033 15.2 1.1 1 23 408 430 408 430 0.99

6 8 4.7e-05 0.0043 17.9 0.1 1 23 454 476 454 476 0.98

7 8 0.066 6 8.0 0.1 1 14 482 495 482 501 0.81

8 8 0.49 44 5.3 2.1 2 23 511 533 511 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.063	5.8	8.1	1.0	3	23	294	315	292	315	0.94
2	8	0.026	2.4	9.3	0.1	1	23	320	342	320	342	0.98
3	8	0.0041	0.37	11.8	1.2	1	23	346	368	346	368	0.96
4	8	0.0057	0.52	11.4	1.0	1	23	381	404	381	404	0.92
5	8	0.00036	0.033	15.2	1.1	1	23	408	430	408	430	0.99
6	8	4.7e-05	0.0043	17.9	0.1	1	23	454	476	454	476	0.98
7	8	0.066	6	8.0	0.1	1	14	482	495	482	501	0.81
8	8	0.49	44	5.3	2.1	2	23	511	533	511	540	0.97

Sequence Information

Coding Sequence: ATGCTCAAGAACGCATCGATAGTAAATTCAGTTTCGGTGGTAAATTCTAAATTTTGTGTCAAAAACTTAATAATAATATTCTATTTTATTAATGAAAAATGTGGTGCCAAGCAATTTATTCTTATAAAGTGTTTTTCAGGATACATGAAAATGGCGAAGTCGATAAATTTACAAGATCTTGTGAAACATATTGTAAATGGTACATTTGAGCAAAAGTTTTGTCGGATATGTTTGTTACCTTTAGAAGATCTTTACGAGGATGCTTTTACCACTGTTTGTAAAGAAAACATTGAATATTGTATAGCAGATATTCTAGAAGTTGTTTGTCATATACGACTTTCAGCAGTACACAAATTTAAAATATGCCCAAGTTGTTTTATGATAGCATCAGAGGCCTACAAGTTTTATTTATTAACCCAAAAAAGTGAGAAATTACTTAATTTTTATGTCGAGGAATTAAATAATCAAATCCATTCAATAGAAGAACCAGAAAAACTAGCCGCAGAGTCCCTTTGTATAACTTTGCCGTGTATACAGCCAGATAGTTTTGAATATGATTTCGATATTGATAAATTTCCTTTTCAAAGTTGTGCAGACGACAAAAACTTAGAGCTGTATAATAAACACGACATGGCCAAAGCTAAAGATGAACCAAAAATTAAAATGGAATTGAACATAAATGATGACTTTGAGGAAAATATATTGATTATTATGGGAGAGAATGGTGAACCATCATTTTATAAGCCACAGGAAGACGGAACACTGGTATCTCTAGAAAGTAGTAAAAATGATTTTAGTGAAGTTTTGAAACAATTACCGGAAACAAGTATTTTAAAGAAGAAAAAGAAAAGGAAACGGAATCCCATGGAATACAAGATGTGCAGTAGATGCCCCGTCAGGTACAGATTTGTTAGGAAGCTGAAGGAACATATGAAGGAAGAACACGGGGTAGATCTCTTTGTATGCAAGGTATGTCAAGCCATAATAGAAGATGAACAGGAATTTAACAATCATCTACAAACCCACACTGGTATACACACATGTGCTATATGCAATACGGTATTCAAAAAACGGGAAACGATCATTGCTCATTTTAAATGGCACGAAGAAATGAAAAATATGAGTAAGTTAGAGGGTGCACATATTTGTGAAATATGTGGGCTGATACTTAAAAGCGCGGAGCATTTGAAAGAGCACAATGAAAAGAAGCATGTAAAGAAATATACATGTTATTACTGTGGGCGGATGTATAAGGGAGAGATTAGCTTCGAAATGCATATAAAAAAACATGAAATGAATAATGATATTAAACGAAATCCAAGCCAAATAAAAAGTGAAGCCATTAAGAAAAAACGGAAATTTACCTGTCCTACATGCGGGCGAGACTTTGTGGATGAGAGGGCGTTGCTGTGGCATGAACGGCTACATACCAATGAGAGACCTTATGTTTGTGACGTATGCGGGCGCGGCTTCGTGTCGCTGAACCGCCGCAACCAGCACGCCGTCTGCGCGCACACGGCGCCCGCGCGGCGCTGCCCGCTGTGCCCCGCGCTGTTCCACCTGCGCTCCATGGTCAACACGCACATCAAGAAGGTGCATCTCAAAGCGCATAAACGTAGAAACCGTACGAGCAAACACCAGAATGTATTTTGGAAAACAGAAACGGTGCCGATTCAAGAACTCAGCGTGTCCATACAGAACGAAATATTAGAGTTACAAGCGGCACATAATGACGCGATACAAACACCTAAATGGTGA
Protein Sequence: MLKNASIVNSVSVVNSKFCVKNLIIIFYFINEKCGAKQFILIKCFSGYMKMAKSINLQDLVKHIVNGTFEQKFCRICLLPLEDLYEDAFTTVCKENIEYCIADILEVVCHIRLSAVHKFKICPSCFMIASEAYKFYLLTQKSEKLLNFYVEELNNQIHSIEEPEKLAAESLCITLPCIQPDSFEYDFDIDKFPFQSCADDKNLELYNKHDMAKAKDEPKIKMELNINDDFEENILIIMGENGEPSFYKPQEDGTLVSLESSKNDFSEVLKQLPETSILKKKKKRKRNPMEYKMCSRCPVRYRFVRKLKEHMKEEHGVDLFVCKVCQAIIEDEQEFNNHLQTHTGIHTCAICNTVFKKRETIIAHFKWHEEMKNMSKLEGAHICEICGLILKSAEHLKEHNEKKHVKKYTCYYCGRMYKGEISFEMHIKKHEMNNDIKRNPSQIKSEAIKKKRKFTCPTCGRDFVDERALLWHERLHTNERPYVCDVCGRGFVSLNRRNQHAVCAHTAPARRCPLCPALFHLRSMVNTHIKKVHLKAHKRRNRTSKHQNVFWKTETVPIQELSVSIQNEILELQAAHNDAIQTPKW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01506745;
90% Identity: iTF_01507603;
80% Identity: -