Nio007179.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- iec1
- Assembly
- GCA_905147045.1
- Location
- LR989903.1:609641-618473[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2 3.9e+02 2.3 1.8 3 22 447 466 445 469 0.90 2 13 8.1 7.4e+02 1.5 5.4 2 19 491 508 490 514 0.92 3 13 0.0017 0.15 13.1 5.4 1 23 528 551 528 551 0.97 4 13 0.0083 0.76 10.9 1.0 1 23 556 580 556 580 0.92 5 13 2.1 1.9e+02 3.3 0.2 2 23 601 625 600 625 0.87 6 13 3.8e-05 0.0035 18.2 0.3 2 21 631 650 630 651 0.96 7 13 4.6e-05 0.0042 18.0 0.7 1 23 706 727 706 727 0.98 8 13 2e-06 0.00018 22.3 0.5 1 23 733 756 733 756 0.98 9 13 0.0006 0.054 14.5 1.3 2 21 782 801 781 802 0.92 10 13 0.0081 0.74 10.9 0.4 2 23 809 832 809 832 0.96 11 13 0.046 4.2 8.5 3.6 1 20 839 858 839 861 0.95 12 13 0.0016 0.14 13.1 2.1 1 21 867 887 867 892 0.92 13 13 0.021 1.9 9.6 0.5 1 23 898 921 898 921 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCGCCTCACGACGACGATGACGATAACCACCTATGCATTAAGTGTAACGCCACTATCATCGGTCTCGATAATTATGTTAAGCATAGAAAACAAAACTGCGGTAAAAGGAAAACTGAATCTAAAACGGAACTGTCTTCCATCGAGCCACTGGAGCCGACTTACAGTTTAGGCGCTGATGTATTTTTTCAATCTTTAGAACTACAGAGTAGCGTTAAGAAAGCATCTTTGTCTCGATTAACACCACCCACGCCAATTTCTAAAGCAAATATTGATAAAAAGAGTACATTGACGGTGGCCTCGTCATCACATCTTCCTCGAATGAGTCCAATTGAAAACAACTTAAGAGGAGAAGACTGGATCGGTGGACACAGCTTAAGAATAGGAATAAATGAAGACAACCAAACGAAATTGATCAATGCTGTTGCAAGTATCAGTGGATCTGTTAAAAAAGATCTCCCTAGTACTTCATACAATATCAGCAGCTTTAATGATTTTAAAGGCGAAGATGATACCGAAGAATCAGATGATACTGACGACGATGAGGTAGAAGAAGTCATATCACATGGGGGTAAATGGAAACCACCTCCAAATTATACTGGAGGTAAGTGGCGACCAGCGTCTCCAGAACACGAAGATTGGGACTTGAGGGATGAACAAGAACAAATCGGTAGAGATTATGATTACGACGCTCCTCCGCCCGAACACACTAAAGGAAAATGGGTTCCCGGTGCCAATGAAAAAACTCAAATAATGCAAACTACAATCCAATCAAAAGGGTCCGTTCAATATTGGTGTGGTCCATGCAATCGAAGACTCGGCTCTCGAACGATTTATGAAAAACATCTCATGTCTAACTTGCACATGCGCAAAGTTTTGCCAGAACATGAACTGGAGTTTTCTGGACATTTAGATCCGATTCGAACTGTAGCGGACAAACGAACAACCCGACCAATGTCCATCAGCGACAGTCCAAACAATCCAATTCTGAGAAAAAAACATAAGTTATTAGAACCAAAGTTAAACATAAAAATTAAGAAGAAGAAAAGAAAAAGGAAGGCTTACTTTGTTCAATGCACCGGTTGTAAGTCGCGTGTCCGAACTCATCTAATGGGAAAACATTTAATATCACATTACCACTTCAGAAAAGCCACCGATATAAAGAGTGATGTCTACCAACAACTTATTCTTAACAACATGGATGCCATAGTTCACCAGGCTCCATTTCAATGTAGTCCTTGTAAATTTTATACTAACTGGCTCTCGAATTTTATGCAACATTGGTTCTCTGAAGAACATGAGCATATAATCAATTCTATCGATGGCAGATACTGGTGTTCCTTCTGCAAATTCGAATGTGATTCGTCTCAGGAGATGTTAAATCATATGTCAAGCTCAGAACACAGTGAAGTAGTGGCAGTGATTAATCGTTCCATGCCGATTATAATACGGAAGAAGACGATATTGCGCTGTGAAACATGTCATCATGAATTTCGATACAATTTTGAGATTAAACAACATTGTCTAAAAACTGGCCACGAAATAGCTCAAACTGCCACAGATAACTATCAAGAACTCCATAGATGTCAGCACTGCAGACAAAAGTTCAAGTCGTCAGTTACGTTGGCAGCTCATTTGAAGTCGAGACATAAACAAAAAGCATTCTTCTGTCTCGTTTGTTCGAAAAATTTCGAATCTTCTGAAGAAGCCAAACGTCATCGTCAGACTTCAGAACATAGGATTAGAAGAAAAGAGAAATTACGAGAGAGAGGTTTTTCGACGAAAGATTTAAGTAAAAAATGCCCTTATTGTACGGGCAAAGTTGTTTTAAGGAATATTTTAGAACTTAAGGATCATATCAGAAAAGCGCATCCCAACATTAGGAAGAAGTGTCCTAAATGTGGTAAATCGTTTATTTTCTCACAAGAAGTGACGAGACACATACGAGCTAATGCTTGCCAATTTCAAAAATCTGAAACAATCAACTCTTCGATACTGTGGAATTGCAGTCAATGTCTCTTCACGACTGACTCACAGGCTGAATGTTTCTTTCACGAGGTTCTGCATACCGAGCCACTTGCAAAGGAGGATATGAAAAAATCTATCTTAAAATACTCTTGTCCATTATGTCCAAAGAGTTTTAAGAAGGCTTCTTTGAGGTTACATTTGAGGCAGCACACATTCGAAAGGCCGTTTGTTTGTTCGATATGTGGAGCTAATTTTACTCGTCAGTCAAGCTTGTCAAACCATTCGAGAACCGAACATGAAAATTTAGACGCTAAATTGTCAAAATTAACATCTATCGATATAGTTATGACGAAAATAGCGAAGGAGGAACTAAGGTGCAACAAGTGCAAGAAGAAATTTAACGACAGCCAAGCTTTAAACCAGCATTCCAACACGTGTGAGACAGAGGAGAGGCGATGCCCATACGATCAGTGCTCCTACATCGCGTCAACTCCTGCGCAACTCAACAGACATAGAAAGAAACACGGCGAACGCATAAAACACTATGAATGTCCAACATGCGAGTTCAAAACTGACCAAGCCAGCCATATGAAGAGACACTTACTGTGTCACAAGGGAGTGAAGCCGTATGCCTGTCCACATTGCCAATTTACTTGTGCCAGTTTGGAAAATCTACGCAAGCACGTACTTCGGAGTGGTCGCCACCCCGGGCTACATCTGTACACCTGTGTCATATGTTCGTACCAGACTAATATGGCCACTCAATTACGTGCTCACTATACCACAGATCATCCCGAAAAATACGACACAAAAACGGCCTTGGAGGCTGTTAAACGACATTTAATGATAAACGACACAAACAGTTAA
- Protein Sequence
- MLSPHDDDDDNHLCIKCNATIIGLDNYVKHRKQNCGKRKTESKTELSSIEPLEPTYSLGADVFFQSLELQSSVKKASLSRLTPPTPISKANIDKKSTLTVASSSHLPRMSPIENNLRGEDWIGGHSLRIGINEDNQTKLINAVASISGSVKKDLPSTSYNISSFNDFKGEDDTEESDDTDDDEVEEVISHGGKWKPPPNYTGGKWRPASPEHEDWDLRDEQEQIGRDYDYDAPPPEHTKGKWVPGANEKTQIMQTTIQSKGSVQYWCGPCNRRLGSRTIYEKHLMSNLHMRKVLPEHELEFSGHLDPIRTVADKRTTRPMSISDSPNNPILRKKHKLLEPKLNIKIKKKKRKRKAYFVQCTGCKSRVRTHLMGKHLISHYHFRKATDIKSDVYQQLILNNMDAIVHQAPFQCSPCKFYTNWLSNFMQHWFSEEHEHIINSIDGRYWCSFCKFECDSSQEMLNHMSSSEHSEVVAVINRSMPIIIRKKTILRCETCHHEFRYNFEIKQHCLKTGHEIAQTATDNYQELHRCQHCRQKFKSSVTLAAHLKSRHKQKAFFCLVCSKNFESSEEAKRHRQTSEHRIRRKEKLRERGFSTKDLSKKCPYCTGKVVLRNILELKDHIRKAHPNIRKKCPKCGKSFIFSQEVTRHIRANACQFQKSETINSSILWNCSQCLFTTDSQAECFFHEVLHTEPLAKEDMKKSILKYSCPLCPKSFKKASLRLHLRQHTFERPFVCSICGANFTRQSSLSNHSRTEHENLDAKLSKLTSIDIVMTKIAKEELRCNKCKKKFNDSQALNQHSNTCETEERRCPYDQCSYIASTPAQLNRHRKKHGERIKHYECPTCEFKTDQASHMKRHLLCHKGVKPYACPHCQFTCASLENLRKHVLRSGRHPGLHLYTCVICSYQTNMATQLRAHYTTDHPEKYDTKTALEAVKRHLMINDTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985608;
- 90% Identity
- iTF_00843864;
- 80% Identity
- -