Basic Information

Insect: Nymphalis io
Gene Symbol: salm
Assembly: GCA_905147045.1
Location: LR989898.1:8121905-8146492[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.14 13 7.0 1.6 1 21 41 61 41 62 0.93

2 8 3.6e-06 0.00033 21.5 0.9 1 23 362 384 362 384 0.98

3 8 7.1e-06 0.00065 20.5 2.1 1 23 390 412 390 412 0.98

4 8 0.002 0.18 12.8 2.0 2 23 669 690 668 690 0.97

5 8 0.021 2 9.6 1.6 1 14 696 709 696 710 0.94

6 8 0.57 52 5.1 0.0 10 23 737 750 735 750 0.93

7 8 3.2e-06 0.00029 21.6 1.7 3 23 836 856 834 856 0.96

8 8 3.8e-07 3.5e-05 24.5 0.5 1 23 862 884 862 884 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.14	13	7.0	1.6	1	21	41	61	41	62	0.93
2	8	3.6e-06	0.00033	21.5	0.9	1	23	362	384	362	384	0.98
3	8	7.1e-06	0.00065	20.5	2.1	1	23	390	412	390	412	0.98
4	8	0.002	0.18	12.8	2.0	2	23	669	690	668	690	0.97
5	8	0.021	2	9.6	1.6	1	14	696	709	696	710	0.94
6	8	0.57	52	5.1	0.0	10	23	737	750	735	750	0.93
7	8	3.2e-06	0.00029	21.6	1.7	3	23	836	856	834	856	0.96
8	8	3.8e-07	3.5e-05	24.5	0.5	1	23	862	884	862	884	0.98

Sequence Information

Coding Sequence: ATGCCGCGCGTGAAGCCCGCCTGCGTCCGACGCGTCTCCATCGGTGAAAGTTCGGGATCCTGTTCGGAAGAAGATATAAGCCATGCTCTACACGATGAAGCACGAGGACGACCAGAGGCGCATATGTGTCCACGATGTCAAGAACAATTTGAAAATCTACATGATTTTTTGTATCATAAAAGAGTTTGTGATGAAAAAGCAATGCAAATGGGTGAAGAGAGGATGCACTCCGACCCTGAGGATATGGTTGTATCAGGAGATGAAGAAATGGATGGACCTAACAAGCGATTAGAACAAGTAAGAAGGCATCGACAAGATGCAGAAAATAATAATAGCCTCGACGATGGAGAGGCAGAAGTACCTGAAGCTGACGTGCCTCCGGTGGGTCTTCCCTTTCCCGTGGCAGGTCATGTAACCTTAGAAGCTTTACAAAATACAAAAGTTGCCGTGGCGCAATTTGCTGCAACTGCAATGGCTAATAATGCTAACAATGAAGCCGCTTTACATGAACTCGCAGTGTTACAAAGCACACTGTTTACTCTACAACACCAGCAAGTATTTCAACTGCAGTTGATACGCCAACTTCAAAATCAATTATCATTAACTCGAAGAAAAGACGATCAACCTGCAAGTCCGCCACTGTGTGAACCGGAACCAAATGCGCCTTCAACACCGGCTCGATCTCCGTCACCGCCGCGTCCGCCACGGGAGCCCTCTCCTGTCGAACCTGCTCCTCCAACTAGCCAAAACTTGCCCTCAACTCATACACATCTTACACCTAAATCAGAGCCTATATCTATTCCGAAAATTCCGACCTCATCACCACCTATGATGTCGCATCCACCTTATAGTTCTATATCGTCCTCGTTAGCATCTTCGATCATCACTAATAACGATCCTCCACCATCCCTTAATGAACCAAATACACTAGAAATGCTTCAAAAGCGAGCACAAGAAGTCCTCGACAATGCGTCACAAGGTCTTCTAGCTAACAATCTTGCCGATGAATTAGCCTTCCGAAAATCAGGAAAAATGTCACCTTACGATGGCAAAAGTGGGGGCCGCAACGAACCTTTCTTCAAACATCGCTGTCGATACTGTGGAAAAGTTTTCGGCAGTGACTCTGCGCTTCAAATTCATATTCGTTCTCACACAGGAGAGAGACCTTTTAAGTGCAATGTTTGTGGTTCTCGATTTACGACTAAAGGAAATCTTAAAGTACATTTCCAAAGGCATACTGCGAAATTTCCGCACGTCAAGATGAACCCTAACCCTGTACCGGAACATTTGGACAAATATCATCCACCACTCTTAGCACAATTATCACCGGGACCGATTCCAGGAATGCCTCCTCATCCGCTACAGTTCCCTCCGGGTGCGCCAGCTCCTTTTCCGCCAAACTTGCCATTATACAGGCCGCCACACCATGATTTACTGCCACCTCGCCCACTTGGTGATAAACCACTTCCACATCATCCACTATTTGGCATGCGAGAAGAACAAGACGTTCCGGCTGATCTTAGTAAACCTTCAATTCCGAGCCCGCCTCGACCTTCGTCAGAAATGTTTAAATCTGAACCACAAGACGAAGAAAGTCAACGAGATTCTAGTTTTGAAGAGACTGATCATATATCGCCTAAGCGAGAACCTGAAGAAAATGATGGAGGGCATGATGCTGAACAAGACCGATACCCCTCAACATCTCCGTATGACGACTGCAGCATGGACTCAAAATACAGCAACGAAGATCAAATTGGCAGAGAAAGTCCGCACGTCAAGCCTGATCCAGATCAACCGGAGAATTTATCAAGTTCGGAGAGCGGGCGGAGTGCGCGAGCCTCGCCACCGTCGCCATCACCGTCGGTGCTGTCGACGCCGCCACGGCTGCCACAACATTCGCCGCTGCCTTCACCACCTACGCCCCTTGCTGCGCTCGGTGCTCTCGGTGGATCACCCTTCAGCCCACTAGGACTTGCTTTCCCTCCCGCAGTGCGTGGCAACACAACGTGTACCATCTGCTACAAGACGTTCGCCTGCAACTCCGCGTTGGAGATCCACTATCGCAGCCACACCAAAGAACGCCCTTTCAAGTGTACCGTCTGTGATAGAGGCTTCTCGACAAAGAGCAGTGGCGGCGGTTGCCGGTGCGGTAGGCGCACGCGCGCACCCCGCCCGCCGCACGCCACTGCTTTGGACCTCTGGAACGCCTTCGTCTACCCGGGTAATATGAAGCAGCACATGCTAACGCACAAGATTCGAGACATGCCTCCCGGTTTCGATAAAGGCGTGAGTGGTTCGACCGGACCGCCCAGCGAAGAAGGTCGCGATCCCAGTCCGGACCGGCGTTCATCACCTGAGAAAATGGACCTAAAGCGATCGCCGCCTGCGCACCCCCCACCCCCATTGGCACACCCACCACCTATTGACATGCCTCCTTTACCCAAGAGACCTACGGTACCCGTTGCTCCGAGCCATCCGCCGCCGTCGCAGTCCTCCAAGCACCTCTGCGGAGTATGCCGTAAAAATTTCTCCTCTTCCTCAGCGCTGCAAATTCACATGCGCACACACACCGGCGACAAGCCTTTCCGATGTGCAGTTTGCCAGAAAGCGTTTACGACCAAAGGCAATCTGAAGGTGCATATGGGCACGCACATGTGGAGCGGCGGTGCGTCCCGACGCGGACGTCGCATGTCCCTGGAGCTGCCACCGCGACCGCTGCATGAGCCGCACGATCTGCTGCGACGCCCCGACCTCTTCTACCCTTACCTACCTGCGCCCTTCCTCAATGGCATGCAACAAAAACTGAACGAGATATCAGTCATTCAGCAGAATGCAGGACAGAACGGTGTAGCCGCTAAATTCCCGGGCTTGCTCGGTTTCGGGGCGTTCGGAGCGGGACGGCCGGGAGCCGCGTCTCCGCTCGAAAGGCCACCCTCGCTCGAGGGCGGCGACGAAAGACAAGCAGCAATGCGCGAACTCGCCGAAAGAGGACGTGAATTGGCCGAACGCAGTCGACAAATGCGCGAGGATAGCGAACGGGAGCACTACAGAGCTACAGGTGCGCTTCCGGCTCACGCGCCGAATGCAGCGCAGGCGTCGCCGCCGACGCCGCACGCGCACCCGCACCCGCTGGCTTCGCTGCCGCCGCCCGCGCGCACGGAAGGCCTCACCGTGTAA
Protein Sequence: MPRVKPACVRRVSIGESSGSCSEEDISHALHDEARGRPEAHMCPRCQEQFENLHDFLYHKRVCDEKAMQMGEERMHSDPEDMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLDDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATAMANNANNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQPASPPLCEPEPNAPSTPARSPSPPRPPREPSPVEPAPPTSQNLPSTHTHLTPKSEPISIPKIPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPNLPLYRPPHHDLLPPRPLGDKPLPHHPLFGMREEQDVPADLSKPSIPSPPRPSSEMFKSEPQDEESQRDSSFEETDHISPKREPEENDGGHDAEQDRYPSTSPYDDCSMDSKYSNEDQIGRESPHVKPDPDQPENLSSSESGRSARASPPSPSPSVLSTPPRLPQHSPLPSPPTPLAALGALGGSPFSPLGLAFPPAVRGNTTCTICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCGRRTRAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDMPPGFDKGVSGSTGPPSEEGRDPSPDRRSSPEKMDLKRSPPAHPPPPLAHPPPIDMPPLPKRPTVPVAPSHPPPSQSSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQNAGQNGVAAKFPGLLGFGAFGAGRPGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQMREDSEREHYRATGALPAHAPNAAQASPPTPHAHPHPLASLPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01312492;
90% Identity: iTF_00985449;
80% Identity: -