Nio021083.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989925.1:5384238-5400367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.033 3 9.0 0.8 1 23 361 383 361 383 0.97 2 13 0.00052 0.047 14.7 7.1 1 23 390 412 390 413 0.95 3 13 0.06 5.5 8.2 1.8 1 23 417 439 417 439 0.97 4 13 0.054 4.9 8.3 1.8 1 23 444 467 444 467 0.97 5 13 0.017 1.5 9.9 0.2 1 23 471 494 471 494 0.93 6 13 0.0093 0.85 10.7 0.5 3 21 508 526 507 531 0.93 7 13 1.3 1.2e+02 4.0 0.4 2 23 584 606 583 606 0.94 8 13 0.0081 0.74 10.9 0.7 2 20 622 640 621 643 0.91 9 13 0.00022 0.02 15.8 0.3 1 23 649 671 649 671 0.97 10 13 1e-05 0.00094 20.0 1.0 1 20 678 697 678 699 0.95 11 13 0.00079 0.072 14.1 0.4 6 20 708 722 706 724 0.93 12 13 0.00023 0.021 15.8 1.6 6 23 733 750 731 750 0.95 13 13 4.5e-05 0.0041 18.0 4.1 1 23 756 779 756 779 0.95
Sequence Information
- Coding Sequence
- ATGCTTGAAAACCTGAGAAAAAGTGTTTTCAAAATGCGGTGCTGCGTACCATCCTGTAAAAACGATTCTAGACATATTTCTAAGTCTCAAGGAATAACATTTCATGTCTTTCCAACGGAACCTGTTCTTCGTGCCTCGTGGCTGAGAGCCGTGGGAAAGGACACATGGTCTCCGAGAGAGAGGAGCGCTGTGTGCTCGGAACACTTCTTGTGTGATGATCTCTATGAAACTAAGAGTGGATTGAGGAAAGTGAGGACTGGAGCTGTACCGATTGTGATGCAAGTTACATCTAACTGTGAATTCGGTGAATCGGCTAGTTCGAAAATATGCAGAATATGCCTCGGTATGGAAATGAAGCTGTATCCTATGACGATATACAAATTGGACAAAGCATATGAAAATCTGACTGGAGTTATGATATCCGGAGACGAGCTACCGCAGAAATTGTGCGCGGAATGCGCGAAGAGATTATTGAATTGTGATAAATTGAGATCAAAAAGTTTAAGAGCGAACTTGTTGCTCTTGGAGTTAGTTAAGAAACAGGAGATTCTAACCATACATAATATAAATACAATAAACCGCGAGGAAAGCCAGTTTAAATCCGACCTTATAAAGAAAACATTCGACCCCGACCACTGCGATCTTTATATAGAATATTCAGAAAATCAAGACGAACAGTACAAAAATCCAATACAGGAAACGGAAACGGAAAATTTGGACGTGAAGAGCGAGAAAGATGACGATATATACATGAACGAAATATTTACTGAGGCCAGAGATGAGATTAATATAAACGCTGCAGACGACGGTGAAACGAATTTCGTAGCGACGAACTACTCGACGGACGACAGTCTACCGCTCGAGACGCAAAGGAAAAAAGTTAAAAAGATAAAAACGAAAGAGAAGAAATTAAGGAAAAAGATTAAAGATAAAGCCGAACCGAAGATAGATAGACGAAGGAAACCCTTTCTGAACGATGACCTGAACGAAACGCTGTTCACGATAACCGATCTCACTTTCGAGGAGCAAGTCGCTGAAATACATAAGAGGCAAGAGTCGTCTAATTATAAGAATTCAATGTATAAGTGTACGGAGTGTTTTAAAGGTTTTTTGGACGAAACCGCGTACAACGGACACATGACGAGGCATACGAATCAATGCGGCGAGTTCGAGTGTGACATTTGTAAAACTCACTTCAAACACCCACACGCGCTGAGGAAGCACATCACAGCGCACCACACGCAGCGTTTCAGTTGTAACCAGTGTCCGTATGTAACGACGCACCGGCAGACAGCTAGACTGCACGAGAGATGGCACAAGGGCACGAAGTATCAATGTCCACACTGTCAGGATGAATTCGTTAAATTCACGACGTACATGGGTCACATACGGATAAAACACCCGTCGGACTTTGTGTGCGCGCTGTGCGGGTATTCCTTCGTCAGCGAGAAAGGTATCGAACTGCACAAGAAACTCAAGCATCGCCTCGATGATGGCCAGATACCCGAAGACGGTCCGCTGTGTGACATGTGCAACGTAAGATTTGTGTCGCAGGAAGCGTACAGAAGGCACCTGCACGTCTCCGCCCGGCACAACACGAGCGATTCCGATTCGAAAGAATCGAACAAGCCGCGAAAGGGCAGATCTCGTATCGTCAGAGAGAAGAAGAGGTGTATAGACGAGAGAGATGATGAAGACGAAAAGAAAAGAGTTTATCCGAGTCAGATGAGGAAGGCAGAGGGTCCGATACCCTGTGAACAGTGCGGTCTCCAATTAGAAGATTCCAGAGCGTACCACGGACATTTCAGACGTATGCATCCGGACAAGAACCGAACGAAGTACCCGTCAATGAAGTCGCCCTGTATGTGCGAGGTGTGCGGGAGGATGTTCCAAAGCTACGCGCTGCTGAAGGACCACCGCTGGGTGCACACGGGCGAGCGGCCGTTCGCGTGCGAGTCGTGCGGGAAGGCGTTCCGCATGCGGCAGCGACTCGTGGCGCACAGGAGGGTGCACGCGCCGCGACGGGCCGCCTTCGTGTGCGCGCTGTGCGGGAAGAGCTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTACCGCCCTCTCGCGTGCGCTGTGCGGGAAGAGCTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTACCGCCCTCTCGCGTGCGCTGTGCGGGAAGAGCTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCATCCACACCGGCCTGAAGCCGTTCAAGTGTGAAATGTGCGGGAAGTGCTTCAAGCACGCGAGCGAGAAGCGCGCGCACATCACGTACGTGCACCTGAAGAAGCCCTGGCCGAAGCGAGCGCGGGGGAAGCGGCGAGCGGACAGACCAGGACAGATGGGTCAAAGTTCGCTGCCGGCGGGAGTGAGCGAAATGGATATAGCTCAGCCTATGTGGCCCAATTGTGACCCCAAAATGGGTGACATGAACAATATCATAGACGATAAACCCATATATTATAATTTGAAAATATAA
- Protein Sequence
- MLENLRKSVFKMRCCVPSCKNDSRHISKSQGITFHVFPTEPVLRASWLRAVGKDTWSPRERSAVCSEHFLCDDLYETKSGLRKVRTGAVPIVMQVTSNCEFGESASSKICRICLGMEMKLYPMTIYKLDKAYENLTGVMISGDELPQKLCAECAKRLLNCDKLRSKSLRANLLLLELVKKQEILTIHNINTINREESQFKSDLIKKTFDPDHCDLYIEYSENQDEQYKNPIQETETENLDVKSEKDDDIYMNEIFTEARDEININAADDGETNFVATNYSTDDSLPLETQRKKVKKIKTKEKKLRKKIKDKAEPKIDRRRKPFLNDDLNETLFTITDLTFEEQVAEIHKRQESSNYKNSMYKCTECFKGFLDETAYNGHMTRHTNQCGEFECDICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCALCGYSFVSEKGIELHKKLKHRLDDGQIPEDGPLCDMCNVRFVSQEAYRRHLHVSARHNTSDSDSKESNKPRKGRSRIVREKKRCIDERDDEDEKKRVYPSQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFACESCGKAFRMRQRLVAHRRVHAPRRAAFVCALCGKSFSTHSNRQRHMFVSTALSRALCGKSFSTHSNRQRHMFVSTALSRALCGKSFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRARGKRRADRPGQMGQSSLPAGVSEMDIAQPMWPNCDPKMGDMNNIIDDKPIYYNLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00825075;
- 90% Identity
- iTF_01079963;
- 80% Identity
- iTF_01079127;