Nio020980.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989925.1:2617565-2635410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0003 0.027 15.4 0.7 1 23 300 322 300 322 0.99 2 11 0.0014 0.13 13.3 1.7 1 23 329 351 329 351 0.99 3 11 4.2 3.9e+02 2.3 0.5 1 9 355 363 355 378 0.73 4 11 0.008 0.73 10.9 2.3 1 23 385 407 385 407 0.98 5 11 2.9e-05 0.0027 18.6 1.0 2 23 414 435 413 435 0.97 6 11 2e-05 0.0019 19.1 1.6 1 23 441 464 441 464 0.97 7 11 0.00015 0.013 16.4 0.6 1 22 469 490 469 494 0.93 8 11 0.0002 0.018 15.9 0.1 1 21 502 522 502 525 0.90 9 11 0.0029 0.27 12.3 0.4 2 23 532 554 532 554 0.97 10 11 3.9e-07 3.6e-05 24.5 0.3 2 23 562 583 561 583 0.97 11 11 0.18 17 6.6 0.0 6 21 593 608 590 611 0.89
Sequence Information
- Coding Sequence
- ATGAATGTTAACCTATCAGTAACATATAATACTATGGAAATATGCCAAACTTGTCTAAGAACTGGCGTCTATATCCATCCCATGTCTGTAGAAGATTTAAAAAGTTACCGCTTATTTATACCGAAGGTAGAAGATCCATTGGTTATTATGTATATTTGTATATACTGTAAGAGTTTCCTGCGAAGAATTGTCAAATTTATTGAGCAATGTCGACTCTCCGACGCTATTATAAAGGAGGCTCTTAGTAAAGGTCCAGAAATACTACCGAAAGTAGGATGTGATCGTTTGGGTACATCGAAAACAACATACAATTATGTAGGAACTCGTAATGATGTAGATTTTAAAGAAGAAGGTGATCTTAAAAACGAGACAAAAGATGATGAGATACCGTTATTAAATGCCAATAACGGTGATGAAGACTGTGATGATTATTACGATGAGGAATTGTTTTCTTTTCAGGTTCCAGAAGGTTCCCCTAAAGTTAGAATAGATCGTTTGGGTACATCAGTAATAACGTACTATTACGTAGGACCTGATAGTGATACAGATTTGAAATTAGAAGACAATCTTAAAAACGAGGATGATGATGACGATGACATACCGTTAATATTTCTCAATCCTAGCAACGGTGATGATTGTAATGATCGTTATGATGATGAGGAATTGGATAAATCCAACATGAAAATGGAAGTTAAAATAGAAGGTTTCGAAGATATAGCACAGACGGATAGACCAAACGGTAAAACAAAGAAACCCAAGAAGAAACATGTTAAAGAAGGATTCACGACAAGAATGGTGACCGAGACGAATGAGTATGTCGTCATCAAACTAACTAAAGAACAGATAATGGAAGAAATGAAGCAAAATTCGAACAGCGAGAAGTACAAAATACTACCATATAAGTGTGAGAAGTGCGTCAAAGGTTTCAACTTCGAAGATGTTCTGCAATCACATATGGAAAAACATTCCCCTAGCAATGGTCCGTTTCAATGCGAGCTCTGTGAACAATATTGTCCGAGTAAGGTGTCATTACGGGGTCATATGAAGTCGCATTCAACGAGATATAAATGTAAATTGTGCGATTTAGTAAGACTGTCACGGCAACACATACTCGAGCACTACTCATTGGAGCATACGGATTCAGCTGCGCTGTACAGATGTCCCAATTGCCCCCACACCACTAATAAGCGTACCGTGATGCAAAGACACGTGAGGTTGCATTCGACAAACGAGCCACTGAAGTGTAAACTGTGCGGGAAATTATATAAGAGTAAGGAGTCGCTAAGGGTTCATGTTATGCGTCACGATAGCAAGAAGTTGCATCAATGCGATGTATGCACGAGCTCGTTCGTCTACGCCACGCAGCTGACGAAACACATGCGGTCGGTCCACGAACGGATGGACTACTATTGCGTGGAATGCGATGTAATGTTCAAATCGATGGATAATTTGAAACAGCACTTACAACGAGCTAAGAGACACCGGGACTCGTCATCGTACAAGTACCAGTGCCCGCACTGCGAGCAGCGGTTCGTGTCGGCGGCGACGCTGGCGACGCACGGCAGCGCGGCGCACGGCGCGGACAAGCCGGCGCGCTGCGAGCGCTGCGCGCGGCGCTACAGCAGCGCCGACGCGCTGCGCGGGCACCGCCGCCGCGCGCACGCCGAGCCGCCGCGCGCGCTGCCGTGCCCGCTGTGCGACCGCGCCTTCTCGCGTAAGTATGTCCTGCGTATGCACATGCGTACACACACAGGGGAGCGCCCGCACACATGCCCCTGCGGCGCCGCCTTCGCGCAGGCCTCTGCCCTCCGAGCGCACTCCGCTGCCAAGCATAAGGTACATTAA
- Protein Sequence
- MNVNLSVTYNTMEICQTCLRTGVYIHPMSVEDLKSYRLFIPKVEDPLVIMYICIYCKSFLRRIVKFIEQCRLSDAIIKEALSKGPEILPKVGCDRLGTSKTTYNYVGTRNDVDFKEEGDLKNETKDDEIPLLNANNGDEDCDDYYDEELFSFQVPEGSPKVRIDRLGTSVITYYYVGPDSDTDLKLEDNLKNEDDDDDDIPLIFLNPSNGDDCNDRYDDEELDKSNMKMEVKIEGFEDIAQTDRPNGKTKKPKKKHVKEGFTTRMVTETNEYVVIKLTKEQIMEEMKQNSNSEKYKILPYKCEKCVKGFNFEDVLQSHMEKHSPSNGPFQCELCEQYCPSKVSLRGHMKSHSTRYKCKLCDLVRLSRQHILEHYSLEHTDSAALYRCPNCPHTTNKRTVMQRHVRLHSTNEPLKCKLCGKLYKSKESLRVHVMRHDSKKLHQCDVCTSSFVYATQLTKHMRSVHERMDYYCVECDVMFKSMDNLKQHLQRAKRHRDSSSYKYQCPHCEQRFVSAATLATHGSAAHGADKPARCERCARRYSSADALRGHRRRAHAEPPRALPCPLCDRAFSRKYVLRMHMRTHTGERPHTCPCGAAFAQASALRAHSAAKHKVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081088;
- 90% Identity
- iTF_01081088;
- 80% Identity
- -