Basic Information

Insect: Nymphalis io
Gene Symbol: -
Assembly: GCA_905147045.1
Location: LR989896.1:7978543-7983448[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0014 0.12 13.3 0.0 2 23 198 220 197 220 0.94

2 12 4.5 4.1e+02 2.3 0.2 5 23 229 247 228 247 0.92

3 12 0.00073 0.066 14.2 4.5 1 23 282 305 282 305 0.94

4 12 0.19 17 6.6 0.3 5 23 314 332 312 332 0.94

5 12 0.051 4.7 8.4 1.6 3 23 340 360 338 360 0.96

6 12 1.5e-06 0.00014 22.6 3.7 1 23 368 390 368 390 0.97

7 12 0.00013 0.012 16.6 0.1 1 23 399 422 399 422 0.97

8 12 0.00019 0.017 16.0 0.2 1 23 428 450 428 450 0.97

9 12 9.4e-07 8.6e-05 23.3 2.7 1 23 456 478 456 478 0.98

10 12 0.00035 0.031 15.2 0.6 1 23 483 505 483 505 0.97

11 12 2.5e-06 0.00023 21.9 4.2 1 23 511 533 511 533 0.97

12 12 0.00012 0.011 16.7 2.9 2 23 540 562 539 562 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0014	0.12	13.3	0.0	2	23	198	220	197	220	0.94
2	12	4.5	4.1e+02	2.3	0.2	5	23	229	247	228	247	0.92
3	12	0.00073	0.066	14.2	4.5	1	23	282	305	282	305	0.94
4	12	0.19	17	6.6	0.3	5	23	314	332	312	332	0.94
5	12	0.051	4.7	8.4	1.6	3	23	340	360	338	360	0.96
6	12	1.5e-06	0.00014	22.6	3.7	1	23	368	390	368	390	0.97
7	12	0.00013	0.012	16.6	0.1	1	23	399	422	399	422	0.97
8	12	0.00019	0.017	16.0	0.2	1	23	428	450	428	450	0.97
9	12	9.4e-07	8.6e-05	23.3	2.7	1	23	456	478	456	478	0.98
10	12	0.00035	0.031	15.2	0.6	1	23	483	505	483	505	0.97
11	12	2.5e-06	0.00023	21.9	4.2	1	23	511	533	511	533	0.97
12	12	0.00012	0.011	16.7	2.9	2	23	540	562	539	562	0.95

Sequence Information

Coding Sequence: ATGAAAATGGCTCTGAACATAAAAGAATTGTGTCGATTATGTGGAAAAAAGGATGAGTTTTCTAAGGATTTAAAAGATGAAAATAATAAAAATATACGCAAAATGATACATGACTTTATGCAAATATCTGTTGCTGAACATGATTCTTTACCTACTAGAGTGTGTCTAAATTGTGAAGAAAAGATGGTTTCTTTTCAGCTCTTTGTTTTTGAATGTTTTAAAATGCAAGAAACATTAAGAAAAATGTATTTAGACACATGTGAAAAGTACACAATAAAACTTGAGGAAGATATTGGACTTGATTTTAATGTACAACCAATTAAGTCAGAGGTTAAACATGAATTAACTGCTGACGATTTAGTGAGTGCGATCAATAATGACGAATCTATGTCAGGTTTTGAAGCTGAAGATTATGATAATAAAAATGAAAGTGATGATGATGAGGATATGAGTGACGCTATGACACTTGCAACACTAAAAGAACTAAAGGCGAAAAAGAGTAAAAGAAAAGTATTAAGTGAAACAGAGGAAATTGAACTCAAAAAAATATTAAAGAAATCCAATCTAAACATTAGAGATTTTGTTAAGTTAGAATGTAGTGTATGTGAAGAAGCTGTGAAAACGTGGAGTGGATTAAGAGTTCATTATGCCAAAATCCACAAAAGTAAACCAGTGTTGTTTTGTATATGTGGCTTTATCATCAGGTCGAAAAGTGTTCTTTACAAACATGTGTCGGACCACAGGATAGAAAGCAGAAAATTAAAAAAGGATACAGAAGAATCCGAATCAGATAAACAGAATGAAAATAAATATTCAAGTTTAAATGTAACAGATTTTGTAAATTTCACATGTTCGACATGTCAAAAGCAATGTAAGAGTTGGTATAATTTAAAATCACACTCTGAACGGGAGCACAAGATAACACCCGTTGTCAATTGTATTTGTGGTATTACTCTTAAGTCTAAATCGGTTTTATATAAACATGTACAAGATCACAAGAATCCTAATGTTATCTGCTGTGACAAATGTCCACGAATAACAAAAACAATAGCCGCCATGAACAAACATAAAATGAGACATGTGCCAAAGTCAGAACGAAAGTTTTGTTGTTCTTCCTGTGATAAAATATTCACTTCAAAAGACTCATTAAAATCTCATATGCGTGTACATATACCTATAGAAGAGAGGAAAATATATAGCTGTGAAATATGTGAGCTAAAGTTCACGACCCCGTCTGCGGCCACGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGAGCTACGTGTGCGACTTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATCCACAGCGACGACAAGCCCTTCGTCTGTCGGAAGTGCTCCAAGCCATTCAAAACGTATTCGAATCTGAAGACGCACATGGACACGCACGAGGACACGTCGTACGCGTGCTACGTGTGCAACCGCGTGCTCAACAGTCGGCGCACGCTGCGCAAGCACCTGCTCGTGCACGAGGACAAGTGTCGCCACGTGTGCTCCTACTGCAATAAGGCTTTCAAGCGCCGGCAGACGCTCAAGGTTCACATGTACACGCACACGGGCGACAAGCCGCTCACCTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGTCATCCCGACAAAATGACGGTCCAATACTGCTCCTACAACACACACGTCTCCATGCAAGAGGGTTATCTGAAAAATGATGCAGTTCCCGCCAAAGCTGACGTGGAAGCGCTTTAA
Protein Sequence: MKMALNIKELCRLCGKKDEFSKDLKDENNKNIRKMIHDFMQISVAEHDSLPTRVCLNCEEKMVSFQLFVFECFKMQETLRKMYLDTCEKYTIKLEEDIGLDFNVQPIKSEVKHELTADDLVSAINNDESMSGFEAEDYDNKNESDDDEDMSDAMTLATLKELKAKKSKRKVLSETEEIELKKILKKSNLNIRDFVKLECSVCEEAVKTWSGLRVHYAKIHKSKPVLFCICGFIIRSKSVLYKHVSDHRIESRKLKKDTEESESDKQNENKYSSLNVTDFVNFTCSTCQKQCKSWYNLKSHSEREHKITPVVNCICGITLKSKSVLYKHVQDHKNPNVICCDKCPRITKTIAAMNKHKMRHVPKSERKFCCSSCDKIFTSKDSLKSHMRVHIPIEERKIYSCEICELKFTTPSAATSHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYACYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMTVQYCSYNTHVSMQEGYLKNDAVPAKADVEAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824962;
90% Identity: iTF_01080922;
80% Identity: -