Nio020762.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989925.1:1378724-1404624[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.3e-06 0.00067 20.5 4.2 1 23 21 43 21 43 0.97 2 16 0.021 1.9 9.6 9.8 1 23 49 72 49 72 0.97 3 16 0.0068 0.62 11.1 7.2 1 23 78 100 78 100 0.96 4 16 3e-05 0.0027 18.6 1.8 1 23 106 128 106 128 0.97 5 16 1.3e-05 0.0011 19.7 5.1 1 23 134 156 134 156 0.98 6 16 0.00014 0.013 16.4 0.5 1 23 163 186 163 186 0.94 7 16 1.8e-05 0.0017 19.2 1.6 2 23 195 217 194 217 0.95 8 16 0.0022 0.2 12.7 0.7 2 23 224 245 221 245 0.93 9 16 7.5e-05 0.0068 17.3 2.0 1 23 251 275 251 275 0.96 10 16 0.00016 0.015 16.2 1.3 1 23 281 303 281 303 0.98 11 16 1.1e-05 0.00099 19.9 1.1 2 23 311 333 311 333 0.96 12 16 0.12 11 7.3 0.2 1 23 339 362 339 362 0.96 13 16 0.02 1.9 9.6 2.5 2 20 369 387 369 389 0.96 14 16 5.1 4.7e+02 2.1 4.8 1 22 649 670 649 671 0.90 15 16 4.6 4.2e+02 2.2 0.3 2 22 682 700 681 702 0.71 16 16 0.0011 0.096 13.7 3.2 1 23 824 846 824 846 0.98
Sequence Information
- Coding Sequence
- ATGGCAAAGGACAATATAATCTCGAAGAAAATTGTTAAAACCAAAACTAATTTTGGCGATCATAAATGCAAAATATGTACCAAGAGATTCTCGGATAAATCTGGATTGGCCCATCACATCCAGCTCCATTCAGCTGAACGTCCATTTTCCTGTCACTTGTGTTCGCACACATGTAAAACTAAGAAGTATTTGAGCAAACACATAAAGAGGGTGCACAATGCGGCAACTGAGCACGAGTGTAGCTTCTGCGGAAGGAAGTTCCATTACAAGAGTCTGTTGGATCACCACATGTATATACATACAGACGAGAGACCTTTCAAGTGTGACTCCTGCGGCAAGGGTTTCAACACGAGCTATTCATTGAACACACACAAATATATACATACAGATATAAAACCGTTCCAGTGCAAATACTGTGACTACGCGTGTCGTGACAAATCGACGTTGAGGAAACATCAGGAACGGCACCTGGGCATCAGGAAGTACTTCCAGTGCAAGATGTGCGATAAGGGCTATAAAACGAAGCGAGTTCTCAAACTCCACATTGCTGAGGCTCATTTGGACATGGAAATTAAGAAAAAGCCATGCGTTCACTGTGGGAAGATGTTCAAATCGAATACGACCTTAAACTCTCATATTAAATTGGTCCACGAGAAGATATACTCGTGCAAGTGCGATATATGCGGTGTTGAAATAAGCAACAAGTACAATATGGCGGCCCATCTCACGAAACACGTGCACGCCAAGCCCTTCGAATGCAGCTTTGAAGGGTGTACGAAAAAGTTCAAAGATAAGAGTACCCTCAAAAAGCACTCATTGATCCACTATCCGGATCAACAGTACGTTTGTACGTTGTGCGAGAGACGCTTCACTCGGGTCAATCGTTTGAATGTGCACATGAAACAGCACAGAGCGAAAGAAAAATGTGCGGTTTGTGATTACTGTGGCACCAGTTTTTACAGTAAGAACTACCTCCGAACTCACATAATGAAGAAGCATTGCATCAAAGAGGAGTACAAATGCGACGCGTGCGGGTTCCTCACGTACAACAAGCCGAGCCTGGTGATGCACATCAAGTACGGGCACGCGTTTGAACTGGATAGGCAGTGTAAGATTTGCAAGAAGTACTTCAAAATGCATAAATATTTAAAGTCGCATTATTGGAATACACATTGTATCAAATACAACATGTCCTTGAGGAAGTCAAAAATGAAGAAAAATAAAATTATAATAGAAGAGGACGACAACGATGTGAAAGAGATAGAACTATTGCATGAAGTCAAAGTTGAACCATTAAGCGACTCAGAATCAGATCTGAGGTCGATGGATTATTCGCGAATCGTACCATCAGGAGATACGCCAAGAACAGTAAAGAAGAAGAAAACGCCACCGACACGCTTCGAAGATTTCTTCGTGGAGCACACAATGCGACCTGATGAAAATGCTCAAGGTACAGACTCGGAGTATGTCAGGGCTAGCAATGCTCGAACGTCGGAAAGGTATCAACGTAAGACAGAGACGAACACATCGGTTAGAAAGAGACAGCACCGTACGGTGATGAAAATTGACATCGCAGGACAACCGGAAGCTGGAATTGAAATAAATGATGTCACTATATCACAGCCTGATAAAATTTTCAATAATAAAACATCAGAAAATATAAATGAAATACATAAAGAAAAAGAAACAAATATAACCAAATCCAATAGAAATATTACTATGTCAAAATTAAATGATAACTATAGCGACGATGAAAACACAAATCAAATAGAAAACGAATATAATAAACATAAAACAAATCTAAACAAATCAAATGGAAATATCAACACTATAAATGTTTCTACGTCAAATAAAAATGTTAATGATGATGAATCTGTTGAAAATGATGATAATGGAGTTGATGATGAAAAAACATCACAATCAAAACGGATTAAGCTTAACACGCATCAATGTTACGTTTGTTTCAAGTTATACGAAACAAGAGAGAAATTAATCAATCATTGCAAAGGACATTTCGACGTGTGTAACGTTAACATGTTAAAGAAGTGTCCGTTGTGCGATTACGTTACCAAACTAAACTTACCCAGGCACATGAATTTAGTACACAAACTAAATATAAAACTTCCCTTCGGTGGTATGAAAGATAGAAAAAATAATAACAACGGTTCGAGGTTTTTTTATAATGTAGAAAACGATAATATAAAAGAAGTAGAAGTCATACCGAGCGTAAATAATCTTAATAGACAAGAATGTGTCGCTCTTGATAGGAAAAAACGCACTGCCGATAATGATGGCTTGACGAAAACTAAACTGGTTAAGAAACACGGCGAATGGATTGTTGAAAAGGAAAAGATAAATGTAACAATTAATACAATCGTTCCAAAGATAAATAATGCGGATAGTGAAAATTATTTGAGTAGAATGAAGCTTATGTACAGGATAGCGAAAAATAATGGCCAAAAGATGTTATTCCCTTGTGATAAATGTAAGAAAATTTGCCAAACGCTAAGTGCACTTAAGTTGCACACGAGGAAACACGATCCCAACCCGAAGCCGTTTAAGAAGAAAGTATGGAAACACAAGTTGTCCGAAAACGAGCTGATGAAGTTGAACGATAAGCCACAGATGATAAATCCGAATCGATACGAAAAACCGAAGCCAATTGTCAATAGACATAAATGCGATCCGAAATTGAAAGAGTTCTACGAGACCAACATTAAAGGCGGCGATGTAGAATTTTGGCAGTTTCTGAAGATATTCAATAAAATGTCTCGAGAGAATGTCAACAGTTTCGCCGATTTGGAGAATCGTAAAGAATTCGGTGTACATTTCAGTCTGCCAGACACTAGGGAATCTAGTGCGACGAAAATAACTACAGTTAAAACCAAAAACGCGTTCAAACGTACAATAATGATCAGTAAGAGAAATCACGATAAGAGAAAAGCTATGATCGACGTTTTGAGGCGGAAATTTGCAAACTCAACTGTTGATACGTAA
- Protein Sequence
- MAKDNIISKKIVKTKTNFGDHKCKICTKRFSDKSGLAHHIQLHSAERPFSCHLCSHTCKTKKYLSKHIKRVHNAATEHECSFCGRKFHYKSLLDHHMYIHTDERPFKCDSCGKGFNTSYSLNTHKYIHTDIKPFQCKYCDYACRDKSTLRKHQERHLGIRKYFQCKMCDKGYKTKRVLKLHIAEAHLDMEIKKKPCVHCGKMFKSNTTLNSHIKLVHEKIYSCKCDICGVEISNKYNMAAHLTKHVHAKPFECSFEGCTKKFKDKSTLKKHSLIHYPDQQYVCTLCERRFTRVNRLNVHMKQHRAKEKCAVCDYCGTSFYSKNYLRTHIMKKHCIKEEYKCDACGFLTYNKPSLVMHIKYGHAFELDRQCKICKKYFKMHKYLKSHYWNTHCIKYNMSLRKSKMKKNKIIIEEDDNDVKEIELLHEVKVEPLSDSESDLRSMDYSRIVPSGDTPRTVKKKKTPPTRFEDFFVEHTMRPDENAQGTDSEYVRASNARTSERYQRKTETNTSVRKRQHRTVMKIDIAGQPEAGIEINDVTISQPDKIFNNKTSENINEIHKEKETNITKSNRNITMSKLNDNYSDDENTNQIENEYNKHKTNLNKSNGNINTINVSTSNKNVNDDESVENDDNGVDDEKTSQSKRIKLNTHQCYVCFKLYETREKLINHCKGHFDVCNVNMLKKCPLCDYVTKLNLPRHMNLVHKLNIKLPFGGMKDRKNNNNGSRFFYNVENDNIKEVEVIPSVNNLNRQECVALDRKKRTADNDGLTKTKLVKKHGEWIVEKEKINVTINTIVPKINNADSENYLSRMKLMYRIAKNNGQKMLFPCDKCKKICQTLSALKLHTRKHDPNPKPFKKKVWKHKLSENELMKLNDKPQMINPNRYEKPKPIVNRHKCDPKLKEFYETNIKGGDVEFWQFLKIFNKMSRENVNSFADLENRKEFGVHFSLPDTRESSATKITTVKTKNAFKRTIMISKRNHDKRKAMIDVLRRKFANSTVDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01080951;
- 90% Identity
- -
- 80% Identity
- -