Nio018172.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989924.1:1044135-1047487[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00089 0.081 13.9 0.2 1 23 80 103 80 103 0.97 2 21 0.85 78 4.5 2.1 3 23 131 152 129 152 0.93 3 21 0.00012 0.011 16.6 0.5 1 23 200 222 200 222 0.97 4 21 0.00046 0.042 14.8 0.4 1 21 256 276 256 279 0.90 5 21 0.0026 0.23 12.5 1.1 1 21 286 306 286 307 0.95 6 21 0.058 5.3 8.2 0.4 1 23 351 373 351 373 0.94 7 21 0.013 1.2 10.2 0.6 2 23 398 420 397 420 0.96 8 21 0.0011 0.1 13.6 2.4 1 23 442 464 442 464 0.98 9 21 0.018 1.6 9.8 4.6 1 21 468 488 468 490 0.95 10 21 0.11 9.8 7.4 0.1 3 23 497 518 495 518 0.89 11 21 0.0022 0.2 12.7 4.4 1 23 524 547 524 547 0.96 12 21 0.051 4.7 8.4 2.7 1 23 596 618 596 618 0.94 13 21 3.1 2.8e+02 2.8 0.3 2 23 642 664 641 664 0.92 14 21 0.0042 0.39 11.8 3.3 3 23 688 708 687 708 0.98 15 21 0.0013 0.11 13.5 3.4 3 23 714 734 713 734 0.97 16 21 0.0043 0.39 11.8 2.3 1 23 741 764 741 764 0.97 17 21 4.5e-05 0.0041 18.0 2.4 1 23 770 793 770 793 0.97 18 21 0.0084 0.77 10.8 0.7 1 23 799 822 799 822 0.97 19 21 0.00027 0.025 15.5 0.5 1 23 828 850 828 850 0.97 20 21 8.8e-07 8e-05 23.4 0.6 1 23 856 878 856 878 0.99 21 21 0.00011 0.0096 16.8 5.1 1 23 884 906 884 907 0.96
Sequence Information
- Coding Sequence
- ATGGTGTTACGAGGAACAAAAAGTCCCGCTCTTGCGGATTCAGAGGGGGTTAAAGTTAGACGGGTTAGGAAGTTAAAGGAGAATGTTTGCGCCAGGCAGAAACGACGACGACGGCGAGCAAACAACGAATTGCCAGAGGAATCGGAGAAAAGAATAGCAAAGACAATGATGCGTAGAAACGCAATGACGATTCTCGAATGTTCCACTGCTTGGGCCTTCCGTTGGTTCCAAAGCGCGTATTATTGCTCGTACTGTGATGTTAAATTCGTAGATCCAATACTTTTACGCGGTCACGTTACCACTTTCCACATTGCCGATGCACCTACAAAGCGAATATTTTCTAAACTTACCGAAAATAATATGGTTAAGGTAGATGTATCTGATGTACATTGTAGGATTTGCAATTGTAAGATAGAAAGCATAGATTCTTTGAAAAAACACCTAATGGACGTTCATGATAAAACCCTAAATCATGATTATAACGATGGAATACTGCCTTTTAAACTCGATTCGAACGGTTTCGAATGCCAAATATGTTGCGCTCATTTTACAAGTTTTTGTAAAATCAATGAACACATGAACACACACTTTAAAAACTACATTTGCGATGCATGCGGGAAGGCGTTTATATCCAAATCACGGTTTAGAACGCATGTACAATCACATGAGACCGGTAGTTTTCCGTGTGGGGTGTGTGATGAAATTTTAGAAACGAGGGTCGCTAGAATGTGTCATAGGTCGAAAGTTCACAAAAAAGGAGTTCGATACACATGTCCACATTGCCCCGAAGTTTTTACGACTTACTACGCAAGAGCGAAGCATTTGGTTGATGGACACGCTCAACAGAAGCAAAAATATGAATGCTTTACGTGCGGTAAATCGTTCGAAACGAGCTGTAAACGCGCAGCGCACATTCGCGATGGTGTCGCAACAGAAATAACAGTAAAAATTGAATGGAAAAAAGCGCGAAGAGCTACGGAAGATAAAGCAAATGCCGCCTTGCTTCTCGAATGTTCAAATGCGGTGGCGTTTAGGTGGATGCGTGGAAAATTTATGTGTGCATACTGCCCTAAAATATGCGCAAATGTTAGTGAAATACGTTCTCATAGCCAAGCGCACGATAAACTTCTAATTTTCCATAAAGCAGAAGTTCGGAATTCATTTCCGCTTAGAATTGATATAACAAATTTAAAATGCAGCATTTGTGACTTAAGTTGTATAAGTTTAATGGTCTTAAAAACGCACCTGATAACGGATCATGAAAAAAATTTCAACTCAAAATATAACGATGGTGTAATTCCATTCGTTTTGACTAGCTCCGAATATCGCTGTGTTCATTGCGACACATTGTTTGAAAGCTATATGAATTTATTTAGCCATATGAACGAACATTATCAGAGTTTTGTTTGTTATACTTGCGGAAAAGGATATTCTGCCAAGCACAAGCTAAGAGCTCATCAGAAGTGTCACGAAACTGGAAAAATTGCGTGTCCTAAATGCGACCTTGTATTTGTAAATCATGTTGTCAAAAATAGGCATGTCGCCATTACTCACGGTCCGAAAAAGCGGTATCGCTGTCCTATATGTGATTTGACTTTCAAATCTTGCCATTCGAGATTAAAACATCTGGACAAAATTCATGGACAAAAAAGGGAATATCGTTGCAATACGATCAAGACAGTTAATTGGAAACGGAGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCAATTATAATAGAATACTCGAATGCCTGTCCTTTCCGATGGAAACGCGGTGCTTTCGCTTGTTCGCACTGCCCGAGGACGTTCGGTCATTTTCAGGATGTTTTCAACCATGCTCAGGAACATAGTAATCGTCTCGAAGCCATGAGATACGCACGGCCATACGATAATGTTAAAATAGAAATAAGTAATCTTAAATGTGTTATTTGTCACGACAGCATGAGCGGCTTGGAACAGCTTAAAGAGCATTTGCTAAGCGTTCACCAAAAGCCGATACATAAAGAATTGAGCTTGGGTGTTACACCATTCATTCTTCAGAATAAAGAAATGCTCTGTACACATTGTGATGAACGTTTCTCTTTGTTCTCTAGATTGAATAGTCACATGAATCAACATTATCCAAATAATATTTGTTTTCACTGTGGGAAATCATTCTCCGCCGTTCATCGGTTGAAAGCTCATCAGTTAACTCACGAATCAAATGAAATGGAACACAAATGTTCGAAATGTGACGAAATATTCGATACACGAGCGTTGAAAAATTATCACATAAATACAACACACGCGCCAGAAAATCGCTACAGATGCCCGTATTGTAACTTATCGTTTAAACGTTATTCCGATCGTTTGAGACATTTGAAACAGCTTCATAACCAAACCGTGGAATATCCATGTCATTTGTGTTCAGCGATTTTCGCTATGTCCGACCAGAGAACGAAGCATATTAAAAACGTTCATATAAAACATAAGCAATTCCAGTGCGACTTTTGTCCGAGTAAATTCGTGACCGCTGGACAGTTAAAGAATCATCTTGTGAAGCATTCGGGACTGAGAGAATATCAGTGCGGTGTTTGTAAAAAGAGCTACGCAAGAGCTAGGACGTTAAAGGAACATATGAGGATACACAATAATGATAGACGATTTGTTTGCGAATATTGCAATAATGCCTTCATCCAAAAGTGCAGTCTTAAAAGTCATTTGAGAACGCACCATCCAACCGCGGAACCTACTAAGATTGCAGTTTAA
- Protein Sequence
- MVLRGTKSPALADSEGVKVRRVRKLKENVCARQKRRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWFQSAYYCSYCDVKFVDPILLRGHVTTFHIADAPTKRIFSKLTENNMVKVDVSDVHCRICNCKIESIDSLKKHLMDVHDKTLNHDYNDGILPFKLDSNGFECQICCAHFTSFCKINEHMNTHFKNYICDACGKAFISKSRFRTHVQSHETGSFPCGVCDEILETRVARMCHRSKVHKKGVRYTCPHCPEVFTTYYARAKHLVDGHAQQKQKYECFTCGKSFETSCKRAAHIRDGVATEITVKIEWKKARRATEDKANAALLLECSNAVAFRWMRGKFMCAYCPKICANVSEIRSHSQAHDKLLIFHKAEVRNSFPLRIDITNLKCSICDLSCISLMVLKTHLITDHEKNFNSKYNDGVIPFVLTSSEYRCVHCDTLFESYMNLFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGKIACPKCDLVFVNHVVKNRHVAITHGPKKRYRCPICDLTFKSCHSRLKHLDKIHGQKREYRCNTIKTVNWKRRRRFYNDHRDNAAIIIEYSNACPFRWKRGAFACSHCPRTFGHFQDVFNHAQEHSNRLEAMRYARPYDNVKIEISNLKCVICHDSMSGLEQLKEHLLSVHQKPIHKELSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNEMEHKCSKCDEIFDTRALKNYHINTTHAPENRYRCPYCNLSFKRYSDRLRHLKQLHNQTVEYPCHLCSAIFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHSGLREYQCGVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHLRTHHPTAEPTKIAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -