Basic Information

Insect: Nymphalis io
Gene Symbol: -
Assembly: GCA_905147045.1
Location: LR989905.1:8326080-8331519[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.25 23 6.2 6.5 1 23 65 88 65 88 0.95

2 12 0.05 4.5 8.4 0.6 1 23 96 118 96 118 0.92

3 12 0.0009 0.082 13.9 3.8 2 23 125 146 124 146 0.97

4 12 7.1e-06 0.00065 20.5 1.1 1 23 152 174 152 174 0.98

5 12 1.3e-06 0.00012 22.8 1.3 1 23 183 205 183 205 0.97

6 12 0.00067 0.061 14.3 0.3 3 23 211 232 210 232 0.94

7 12 0.00029 0.027 15.4 7.0 1 23 238 260 238 260 0.97

8 12 1.1e-09 1e-07 32.5 0.8 1 23 266 288 266 288 0.98

9 12 0.00012 0.011 16.6 3.5 1 23 294 316 294 316 0.99

10 12 0.00052 0.047 14.7 2.6 1 23 322 343 322 343 0.96

11 12 0.00039 0.036 15.0 0.2 1 23 349 371 349 371 0.96

12 12 8.5e-07 7.8e-05 23.4 1.3 1 23 377 399 377 399 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.25	23	6.2	6.5	1	23	65	88	65	88	0.95
2	12	0.05	4.5	8.4	0.6	1	23	96	118	96	118	0.92
3	12	0.0009	0.082	13.9	3.8	2	23	125	146	124	146	0.97
4	12	7.1e-06	0.00065	20.5	1.1	1	23	152	174	152	174	0.98
5	12	1.3e-06	0.00012	22.8	1.3	1	23	183	205	183	205	0.97
6	12	0.00067	0.061	14.3	0.3	3	23	211	232	210	232	0.94
7	12	0.00029	0.027	15.4	7.0	1	23	238	260	238	260	0.97
8	12	1.1e-09	1e-07	32.5	0.8	1	23	266	288	266	288	0.98
9	12	0.00012	0.011	16.6	3.5	1	23	294	316	294	316	0.99
10	12	0.00052	0.047	14.7	2.6	1	23	322	343	322	343	0.96
11	12	0.00039	0.036	15.0	0.2	1	23	349	371	349	371	0.96
12	12	8.5e-07	7.8e-05	23.4	1.3	1	23	377	399	377	399	0.99

Sequence Information

Coding Sequence: ATGAGGACCATGAAGGTTACATTTTTAATTATGAATGATTTTAAAAATGAAATTGAATATTTGGAGGATGACATATTTTATGATAATGATGCTGACAACAATGAAGGTGATAGAAGAAGTGAGGAAAGACTTGAATTAGCAGATAGAAAAAAAAATGTCAATCAAAAAAGCTTTACAGCAAAAAAGAAACGATTTAATTGCAACAAATGTTTTAAGAATTTCCTAAAATCAAAGACATTGAGAACACACATTCAGCAGTGTCATAGCAGCAAAACAATTACACCATTTGCTTGTGGACAGTGCAAAGATTCCTTTAATTCTCAAGAAGATCTCCACATACATTCGGCATTGCATGTAAAGGGTAACCACTGGACATGCAATAAATGTTTTAAGGACTTTACAGAACGTAACAGATTCAGACGTCACATCCGGCGTCACATGGAGACGAAGCGGTACCCGTGCGAGACCTGCGACAAAACGTTCTCGGAGCTGTGCGCTCTGCGTCGCCACGCGCGCGTGCACACCGGGGAGAAGGTCGAGAAGAAGTATCGTTGCGATATATGCGACAAAAGGTTCTGCGACAGCAGCCAGCTGGCGGCGCACTCGGCGCGCCACACGGGCGTGCGGCCGTGCGCGTGCGAGTGCGGGAAGGCCTTCCCCTCGCGCCGCCTGCTGGCCTCGCACCGCCTCGTGCACTCCGACCTCAAGCGCTTCGCGTGCGACTACTGCGACAAGCGATTCCGTCACGAGTCGACACGAAACACACACCACCGCACCCATACGGGGGAGAAGCCTTACATCTGCTCGATTTGCGGCAAGACATTCATACAGAGCTCCAACCTCAAGCTACACATGCGCACTCATACGGGTGAAAGACCGTACACGTGTGACGTTTGCGGGCGGAAGTTTACTTCTGGCTCCTCATTGACTTGCCACCGTCGCACGCACACCGGGGAGAAACCCTACAGTTGCCATATTTGCGGAAAAAGGTTTGCTAGGACAGATATTCGCACACACATGCGCCAGCACACCGGCGAACGGCCTTTCGCTTGCTTCGTTTGTCCCAAGAAGTTTATCAATGCTGCACGACTACGTGACCACTATCTCATACATACGGGTGAAAAACCCTACGAATGCGCTATTTGTAACGAGAAATTCAAAAAGAAAAGTTATTTGGCGAAACATCTCAGAAGCCATGATAAAGAGAAAAAAGTAAAACAGAAAAAGATTGTAATTGTCCAACAATTACCTTTCGTGATGGATAATAATTTAATTTATGCAGAAAATGGAACTAATGACATTGCTATAAAAGAAACAACAGAATCGAATGTTGACAATGAATATGAGAATAAGGAAGTTACTTTGGTTACAGAAGAAGTTCCTTTGGAAGTATCCGGAGAGCTTGTATTACAAGATGACAGTAATGTGAAGGCGGACCTCGTAGTGGTCAATGTTGGACATAATAATATAAATTACGAAGAGGGAGACATATGTTTAAATACAAACAATATCAATTTTGAAAATGATCCAAATACACATAATGGTAGTTTGGTGACTGTGAATGAAGGCGAGATGAATATATCGGAGTCCACTTCGGTCTTGGAGGGAAGTGCAGTGAAATTATACCAGTTAGACCAAAGTTTAGTGCAAATACATACGTCTGGCCGACATATCACTATCCAAAAAATTACTAGTAAAATGACTACGAACTTTAATTAA
Protein Sequence: MRTMKVTFLIMNDFKNEIEYLEDDIFYDNDADNNEGDRRSEERLELADRKKNVNQKSFTAKKKRFNCNKCFKNFLKSKTLRTHIQQCHSSKTITPFACGQCKDSFNSQEDLHIHSALHVKGNHWTCNKCFKDFTERNRFRRHIRRHMETKRYPCETCDKTFSELCALRRHARVHTGEKVEKKYRCDICDKRFCDSSQLAAHSARHTGVRPCACECGKAFPSRRLLASHRLVHSDLKRFACDYCDKRFRHESTRNTHHRTHTGEKPYICSICGKTFIQSSNLKLHMRTHTGERPYTCDVCGRKFTSGSSLTCHRRTHTGEKPYSCHICGKRFARTDIRTHMRQHTGERPFACFVCPKKFINAARLRDHYLIHTGEKPYECAICNEKFKKKSYLAKHLRSHDKEKKVKQKKIVIVQQLPFVMDNNLIYAENGTNDIAIKETTESNVDNEYENKEVTLVTEEVPLEVSGELVLQDDSNVKADLVVVNVGHNNINYEEGDICLNTNNINFENDPNTHNGSLVTVNEGEMNISESTSVLEGSAVKLYQLDQSLVQIHTSGRHITIQKITSKMTTNFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -