Nio017228.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989924.1:1192080-1200809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.021 1.9 9.6 0.4 1 23 105 128 105 128 0.92 2 27 2.8 2.5e+02 2.9 0.1 2 23 153 175 152 175 0.94 3 27 0.00034 0.031 15.2 2.2 2 23 198 219 197 219 0.97 4 27 0.0005 0.045 14.7 0.0 1 23 223 245 223 245 0.98 5 27 0.0029 0.27 12.3 1.1 1 23 250 273 250 273 0.96 6 27 4.2 3.8e+02 2.4 1.7 2 23 281 303 281 303 0.92 7 27 9.7e-06 0.00088 20.1 1.9 2 23 311 333 310 333 0.96 8 27 9.2e-06 0.00084 20.2 0.7 1 23 339 361 339 361 0.97 9 27 2.2e-07 2e-05 25.3 2.4 1 23 367 389 367 389 0.98 10 27 0.0029 0.26 12.3 0.8 1 23 471 494 471 494 0.90 11 27 0.13 11 7.2 0.0 2 23 521 543 520 543 0.95 12 27 0.0003 0.028 15.4 0.1 1 23 594 616 594 616 0.98 13 27 0.0094 0.85 10.7 4.2 1 23 621 644 621 644 0.95 14 27 0.062 5.7 8.1 0.6 2 23 652 674 651 674 0.97 15 27 2e-05 0.0018 19.1 4.2 2 23 681 702 681 703 0.95 16 27 0.0049 0.45 11.6 1.8 1 23 709 731 709 731 0.98 17 27 2.3e-05 0.0021 18.9 2.3 1 23 737 759 737 759 0.99 18 27 0.0025 0.23 12.5 4.1 1 23 765 788 765 788 0.96 19 27 0.0012 0.11 13.5 1.1 1 23 854 877 854 877 0.92 20 27 4.4 4e+02 2.3 0.2 2 23 904 926 903 926 0.88 21 27 0.24 22 6.3 0.0 1 23 974 996 974 996 0.93 22 27 0.017 1.6 9.9 2.4 1 23 1001 1024 1001 1024 0.92 23 27 0.04 3.7 8.7 0.9 2 21 1032 1051 1031 1054 0.89 24 27 0.24 22 6.3 2.3 2 23 1061 1083 1060 1083 0.93 25 27 0.001 0.095 13.7 2.7 1 23 1089 1111 1089 1111 0.95 26 27 5.2e-06 0.00047 20.9 1.8 1 23 1117 1139 1117 1139 0.98 27 27 0.0067 0.61 11.2 4.1 1 23 1145 1168 1145 1168 0.95
Sequence Information
- Coding Sequence
- ATGTTCTGCACTAGCCGCCTCCGCCTTGCCGGCCCGCAAGATGCCTCTTCACGCCTCGTTGTGAAGAGGTATCTTGTTGTTCTAGTATGTGATGAGCAAATAATCATCGTATCTGGCGAAAAGGCTGAAGAGCTCCTCCACAAATTACAAGAGTCAAGAGTAAATAGCGTATCGCGTGGCCGTAATAAGAAAACAGCTAAAAGTAAACTAGACGAAAAATGTACGCTAGAGGTTGAAAAACATCGGAGCAATATGACGGAAATATTGCTGAATTCAAACGCGACGCCGATACGTTTCCGCGGCGATATTGGCTATGCTTGTTGCTTTTGCTCTGAGCAGTTTCCGGATCCGGCTGACTTAAAAATGCACACAATAGGCAATCATGACGCGAAAAGTATTAAAAAAGTTGTCCAAGAAATGCGAGTGTATACAGTTAAATTAGATGTAACCGAATTGAAATGTACGTTGTGTCAAAACGATATATCATCTGTGGACAAATTAATAGATCACTTGATAAAAGTACATCAGCGTATAATATATACAGATATAAAAAATCACATGGTACCGTTTAAGTTTCAAGGTGACGAGCTGAAGTGCGCCTTGTGTTCGACGAAATTCACTAAATTCAGAAATTTAACGGAACACATGAACACGCACTTCCGTAATTACGTCTGTGATGTGTGCGGCGCGGGTTTCGTGAACCGTGACATATTGAGGAGTCATTTGAGAATACACAAAACAGGTCTGTTCGCGTGCGATTTCTGTTCGAAGACTTTTAATACAAGAGTTAAGAAACAGTCTCATATCAACATTGTACACAGACGGCTTTATATGACGAGAAAATGCGGATATTGCAATGAGTTATTTGACGATTATCACAAGAAAAGCGATCATTTGGCCAAATATCACGGCGTAGCTCCGACTGTGTTGAAATGTGACTCCTGTGACCGAACCTTCACGAATCAGCAAGGCTTGCGACGGCACACGAGACGGGACCACTTGATGGAGAGGAACTTCGAATGTAAAATTTGCGGCATGAAGTTCTTCGGGAGTGAAAATTTAAACAAGCATATGGTGAAACATACTGGAGAGCGTGATTTTCATTGTGGCATATGCGGAAAATCTTTCGCAAGGAAATTCACTTTGACGCAACACATGCGTGTTCACACTAAGCAGCGTTTCTCCGAAAATCTAAATAGAGAAGACGTTGAAGATAATAAAAATAAATCTACGGAAGAAAATATGATTAAAATAGAAATACCAAGACAAAGTAAACTGAGAACTAAGCTTAAAGCAAAAAAGAAGATTAAGCTAAAACCAATTAAAGAATTATCAAAGCACCATCATAACATAAAAGAGGTACTCCAATGGTCTAACACAACCCCAATACACGGTAAAAGTGACCTGGGCTACTTGTGCTGTTACTGCTCGGAAAAATTCCCCGATCCAGCTGATTTGAAACAACACACGTTAGATCTGCACAAAAACGACTCGAAACCAAAATTCTCACAGAAGAGAGATCTGAAGAAGTATCACGTCAAAGTTGACATAACGGGCCTGCAATGCGATATTTGTAAAATGAACATAAATAGCATAGAAGATTTGATAGAACATTTGAGAGAAATACACGATCGAAAGATTTATACGGATATAAAGAATCACATAGTAGCATTCAAGTTTGAAGGATCAAATACGACCGAATTAAAGTGCGTCGTCTGTTCGAACACTTACACGAAGTTTAAGATACTTTTCGAGCACATGCATAAGCACTCGAGGAACTACGTGTGCGACGTGTGCAGCGCTGGCTTTATTAATAACAGAGCGTTGTTGAATCACCAGAAACGTCACAACCTCGGCGAGTTCAAGTGTGAACACTGCGATAAAGTATTTGACAATATACACAAGAAGAACTCACACGTGACGACCGTTCACGTTCACGGTTATTTGCTGAACAAATGCGGTTATTGCAATCAAAAGTTCGCCGGTTATCGAACGAAAGCTGAACACTTGAGAACGGCCCACGGTATAACGGAACGCGCCAAGTGCCAAGCGTGTGAAAAGAGTTTCTCTACAAAAGACTCTCTAAATAAACACATAAAACGCCACCATTTAATGGACTATCGGTACAGTTGCACTCTTTGTGACATGAAGTTCCACGCTAATAAGAGCTTGGAGGAGCATATGGTGAAACATACTAAGACCCGCAGTTTCCAGTGCAAGGTCTGTTTCAAGCGTTATGGGAGACAACAGACCTTGAAGGAGCATATGCGTATCCATGACAACGATAGGAGATTCAAGTGCGAGCACTGTGTGATGGCGTTTGTCCAAAAATGCAGTTGGCGTCGTCATATGCAAGCCAAGCATGAAGATCAAATAGGTTTGCGAGGATCACAAAAGCAAATTTATTTGAAAGATACTTTAGACCCTAAAATTGAAAATAATGAAGAAGGAAAGCTAAAATTAAAAAAAGGCGGTGAATTACAAAAACACCGGTCCAACGTGAATGAAATACTAATGAACTCCAACGCTACACCGATCAGATGCCGCGGCGCTGTCGGTTACGCTTGCTGCTTTTGCACAAAACAGTTCCCAGATCCCGCAGACCTGAAAAAACATACAATAGAATCCCACGATGAAAAAGCGAAATTGAATTTCTTGAAACGCAAGGACATGTATAAGTTCCACGTGAAATTAGATATAACAGAACTGAAATGTAATATGTGCTATAATAATATTGACACGTTGGAGAAACTAATCGATCATCTTAAAGATGTTCACGATATAAAAATGTTTACTGATATCAAAAATCAGGTGCTACCATTCAAATTCGATACAGAAAGGCTTAGGTGCTTCATATGCATGAATATTTATCACAAGTTCAAGTCCTTATTGGAACACATGAACGTACATTATAGGAATTATGTGTGCGAGGTCTGTAATGCTGGATTCGTGAGTCGAGCTATTCTAGTTCAGCACGAGGAGAGTCATAAACTTGGAACGTTCAAATGCGATCATTGTCCAAAAATATTCGAAACGTTAAGGAAAAAAAGGTCACATGAAAAGGGTATCCACACGCATTCAGATGTGCTGAACAAATGCGGATACTGTGATGAAAAGTTCAAGGATTATAGGAAGAAGGAAAAACATCTCGTCGATGTTCACGGTATCGGCAATCCCTTGAAATGTCAGTCTTGCGAGAAAACTTTCGCGAATCAAAAAGTACACACTGTTCATATAAAGAGACTCCACTTGATGGATAGGAGGCACAAGTGTAGCGAGTGCGATATGACTTTTTTCTCGTCAGCTGAATTGAAGAGTCATTTCGTAAAGCATACCGGGTTGCGGAAATTCGAATGTGAAGTGTGTCACAAGGCATATGGTAGGAAGAAAACGTTGCGCGAACATATGCGCATACATGCAAATGATAAACGTTTCAAATGCGAGCACTGTGGGCAATCGTTTGTTCAGAAGTGCAGGTGGCGCGGACACGTGCGTGCGAAACATGGGGAGCAAGTGTAA
- Protein Sequence
- MFCTSRLRLAGPQDASSRLVVKRYLVVLVCDEQIIIVSGEKAEELLHKLQESRVNSVSRGRNKKTAKSKLDEKCTLEVEKHRSNMTEILLNSNATPIRFRGDIGYACCFCSEQFPDPADLKMHTIGNHDAKSIKKVVQEMRVYTVKLDVTELKCTLCQNDISSVDKLIDHLIKVHQRIIYTDIKNHMVPFKFQGDELKCALCSTKFTKFRNLTEHMNTHFRNYVCDVCGAGFVNRDILRSHLRIHKTGLFACDFCSKTFNTRVKKQSHINIVHRRLYMTRKCGYCNELFDDYHKKSDHLAKYHGVAPTVLKCDSCDRTFTNQQGLRRHTRRDHLMERNFECKICGMKFFGSENLNKHMVKHTGERDFHCGICGKSFARKFTLTQHMRVHTKQRFSENLNREDVEDNKNKSTEENMIKIEIPRQSKLRTKLKAKKKIKLKPIKELSKHHHNIKEVLQWSNTTPIHGKSDLGYLCCYCSEKFPDPADLKQHTLDLHKNDSKPKFSQKRDLKKYHVKVDITGLQCDICKMNINSIEDLIEHLREIHDRKIYTDIKNHIVAFKFEGSNTTELKCVVCSNTYTKFKILFEHMHKHSRNYVCDVCSAGFINNRALLNHQKRHNLGEFKCEHCDKVFDNIHKKNSHVTTVHVHGYLLNKCGYCNQKFAGYRTKAEHLRTAHGITERAKCQACEKSFSTKDSLNKHIKRHHLMDYRYSCTLCDMKFHANKSLEEHMVKHTKTRSFQCKVCFKRYGRQQTLKEHMRIHDNDRRFKCEHCVMAFVQKCSWRRHMQAKHEDQIGLRGSQKQIYLKDTLDPKIENNEEGKLKLKKGGELQKHRSNVNEILMNSNATPIRCRGAVGYACCFCTKQFPDPADLKKHTIESHDEKAKLNFLKRKDMYKFHVKLDITELKCNMCYNNIDTLEKLIDHLKDVHDIKMFTDIKNQVLPFKFDTERLRCFICMNIYHKFKSLLEHMNVHYRNYVCEVCNAGFVSRAILVQHEESHKLGTFKCDHCPKIFETLRKKRSHEKGIHTHSDVLNKCGYCDEKFKDYRKKEKHLVDVHGIGNPLKCQSCEKTFANQKVHTVHIKRLHLMDRRHKCSECDMTFFSSAELKSHFVKHTGLRKFECEVCHKAYGRKKTLREHMRIHANDKRFKCEHCGQSFVQKCRWRGHVRAKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -