Nio017587.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989924.1:1122155-1126703[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 1.9e-06 28.0 0.0 1 36 154 189 154 195 0.87 2 2 8.8 1.3e+04 -3.5 0.0 30 38 511 519 511 521 0.81
Sequence Information
- Coding Sequence
- ATGGGCAAAAGTAAAAGGGGTGATTATTTATATAGATGTAAATGTTGCTTGGAAGAAGTCGGCTTGAAGAATCTGTGGACGGACTATTATAAAGATGGTGAATGCGAAATATACGGTGAAATGTTGACGGAGTGTTTTGCGCTTACATGGGAACCACCACCAGAAGATGCGGAGATGGAATACATATGTGACACCTGTGTGTCTCGTCTCCGAGATGCAGTTACCTTTAAAAAAGAGATATTATACACGGAGCATTTAATTTTGGAACAAATGAAGAACACAGCCAACGATCACATCAAGCAAGAGGAAGAGTCAGAAGATGAAATAAAAACGGAATATTTAAGTATAGAATATTTAGAAGACGATATTGATAGAGATAAGACAGACATCAAAATCGAGAGTCCTCAAAGGAAACAGGAGGAGGAAGTATTGATGATTAAGAGCAGAAGCAAGACATACACAGATGAAGATTTGGAGAAGTGTCTACAAGCTGTCATGAGTAAAGCATTATCACAAAATAAGGCGTCGATACTTTATAACGTACCAAGGAAGGCCATCAGCTCAGCCATCGCTAGAAGGCAGCTACTAGAAGACACGGAAAAAACCAAGAAACGGAGACGACCGGATTTGCAGAAGCGTCAAGAAAATGTGGATTATATAATGAAATACACGAACGCAACGCCATTTAAAGGATTCGTACGTACGGGATACGGTTGCTTCTTCTGCTCGGTTGAATATGAAAAAGCTTCGGACCTCAAAGAACATACAATTGTAGAACATTTCAGTGAAAACATGCTCAGGGTGAACGTTATATCAGATCGAAGCGTGAAGCTAGACTTAACAGACCTCATCTGCAAAATTTGCGGTGACAGCATAGACTCCTTGGAGAACTTACTCGACCACCTCAGATTGGAGCACAGCGTAAAAATAAACACGGACATCCACAATCATCTCGTTCCATTCAAATTCGACGGCGAAACGCTAAAATGCGCCGTCTGTTCGGAGGAATTCCTCAGTTTCAAAGTGTTAAACGATCACGTGAATTTGAATCATTACAAGAACTACGCGTGCGAGGAGTGCGGTCGCGGTTTCATAAATAAACGTTCGCTGCAATCGCACGGCTATCGCCACGAGACCGGCGTGTTCACGTGTCAGTTCTGCGCTAAAGTTTTCACGACGCGAATACGTCGGCTCGATCACGAACGGTCCGTCCACATGTTCAACAACAAACGTCACAAGTGCGGCTACTGCGGCGAGAAGTTTATCGATATAGCGAAGAAGAAGGAGCACGAGGTGATCGTGCATAGCGCAGCGAAACTTCTCTACAATTGCCAAGCGTGCAGCAAGAGTTACAACAGCCAGAAGTCCTTGAGGACTCACATACGGAGCTTCCATCTGATGCTTCGACCATTCAAGTGTTCATATTGCAGTTTAGGTTTCTACAAGAATATAGAATTGAAGAAGCATATGGTCAAGCATACTGGCGAGAAGGATTATCAGTGCGTTGTGTGCAATAAGGCGTATGGGAGGAAATCGACGCTGCGGGAACATATGCGTATACACGCGAACGATAGGCGGTTTAAGTGCGAGCATTGCGGACAGGCGTTCGTGCAAAAGTGCAGCTGGCGGGGACACATGCGTGCGAAGCACGGAGAACAAGTGTAG
- Protein Sequence
- MGKSKRGDYLYRCKCCLEEVGLKNLWTDYYKDGECEIYGEMLTECFALTWEPPPEDAEMEYICDTCVSRLRDAVTFKKEILYTEHLILEQMKNTANDHIKQEEESEDEIKTEYLSIEYLEDDIDRDKTDIKIESPQRKQEEEVLMIKSRSKTYTDEDLEKCLQAVMSKALSQNKASILYNVPRKAISSAIARRQLLEDTEKTKKRRRPDLQKRQENVDYIMKYTNATPFKGFVRTGYGCFFCSVEYEKASDLKEHTIVEHFSENMLRVNVISDRSVKLDLTDLICKICGDSIDSLENLLDHLRLEHSVKINTDIHNHLVPFKFDGETLKCAVCSEEFLSFKVLNDHVNLNHYKNYACEECGRGFINKRSLQSHGYRHETGVFTCQFCAKVFTTRIRRLDHERSVHMFNNKRHKCGYCGEKFIDIAKKKEHEVIVHSAAKLLYNCQACSKSYNSQKSLRTHIRSFHLMLRPFKCSYCSLGFYKNIELKKHMVKHTGEKDYQCVVCNKAYGRKSTLREHMRIHANDRRFKCEHCGQAFVQKCSWRGHMRAKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506645;
- 90% Identity
- iTF_01079330;
- 80% Identity
- iTF_01079330;