Nio021536.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989925.1:4471052-4473673[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-12 4e-09 36.5 0.0 1 38 8 46 8 50 0.92 2 2 0.089 1.3e+02 2.8 0.1 9 18 51 60 48 61 0.89
Sequence Information
- Coding Sequence
- ATGCCGAAGAGAAAGCTATGGGATCCCGAAGCAATGAAAAAAGCCGTTGAAGCTGTCCGAACTAAAGAAATGGGATATAAAAAGGCAGTTAAGTTATTTAATGTGCCAAGAGCTACTTTAAAAGATTATGTCAAAAAGTCTGATAAATCTATAGAAGCTATAGTTTCTGGAAAAATGGGAAGAAAACCAATTTTGCCAGTTGAATTAGATGAGGAGTTGGTAAACTATTGTTTACAAATGGAAAAGAATTACTATGTTGTCACCGCTTCGGACAGAAAACATCAACCAAATACCGATGAGATCACAACTGACATTGTTCATTTGGCTAACCGTTTGCCTGACATTGCATTTACTGCTGATGATATTGATGATCTGTTATTCTCACATTCGCAAGAACTGACCGATGAAGATCTTATTGAATTGGAGGCACAAGTACAAAAGGAAGCAATCGAGTCACAAAAAATAGCTTCTTCTATAACCTATCAGTGTTACCAAGATCTGTATGATAGCAAGAAGAAAGAAGGGAAGCAATCTAGAATTGATAGTTTCTTTAAGCCATAA
- Protein Sequence
- MPKRKLWDPEAMKKAVEAVRTKEMGYKKAVKLFNVPRATLKDYVKKSDKSIEAIVSGKMGRKPILPVELDEELVNYCLQMEKNYYVVTASDRKHQPNTDEITTDIVHLANRLPDIAFTADDIDDLLFSHSQELTDEDLIELEAQVQKEAIESQKIASSITYQCYQDLYDSKKKEGKQSRIDSFFKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -