Basic Information

Insect: Nymphalis c-album
Gene Symbol: -
Assembly: GCA_905332345.1
Location: CAJOBY010000021.1:2010889-2014035[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0021 0.16 12.9 1.0 1 23 299 322 299 322 0.92

2 9 0.013 1 10.4 2.2 1 19 340 358 340 362 0.92

3 9 2.3e-05 0.0017 19.1 3.7 2 23 368 389 367 389 0.97

4 9 0.00014 0.011 16.7 0.4 2 23 490 511 489 511 0.96

5 9 0.25 19 6.4 0.2 2 23 531 553 530 553 0.96

6 9 8.9e-07 6.8e-05 23.6 4.1 1 23 559 581 559 581 0.98

7 9 0.0012 0.093 13.7 2.3 1 23 586 608 586 608 0.97

8 9 0.051 3.9 8.6 3.3 2 21 615 634 614 637 0.92

9 9 0.067 5.1 8.2 2.5 3 19 676 692 675 697 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0021	0.16	12.9	1.0	1	23	299	322	299	322	0.92
2	9	0.013	1	10.4	2.2	1	19	340	358	340	362	0.92
3	9	2.3e-05	0.0017	19.1	3.7	2	23	368	389	367	389	0.97
4	9	0.00014	0.011	16.7	0.4	2	23	490	511	489	511	0.96
5	9	0.25	19	6.4	0.2	2	23	531	553	530	553	0.96
6	9	8.9e-07	6.8e-05	23.6	4.1	1	23	559	581	559	581	0.98
7	9	0.0012	0.093	13.7	2.3	1	23	586	608	586	608	0.97
8	9	0.051	3.9	8.6	3.3	2	21	615	634	614	637	0.92
9	9	0.067	5.1	8.2	2.5	3	19	676	692	675	697	0.92

Sequence Information

Coding Sequence: ATGGAGGAGGAAATCTACATAACGGACCCCGAAGGTGTTTACCCAGTATTACTTATACCGAAAAAGTGCACCACGTTGGAGACAAACTGCGATGCTACCGACAATGTATTCATAGATGTAAATATAACATCGCCGGATACTGAGGGCAACGAGACGTGTATATACTCTGGTTTCTGCAATGTTAAACTGATCGACAACTACGACGTGAACATCCACGAGGCTGACTCAAATGGCCACTCCTCTGATAACAATGACAATAACTCAGTTCCTATCATAGTCACCGAAGCGGGTAACCAAGCTTACCCCCCCTACAGCCAGTCGCAAGTGTGGATCGATCCAGCCAGGAGTCCATTCGTATACAACAGTTATGATACAGTGGAATCTCAGGAGCATTATTCGGTCTATCATCAATCGCACTCGAGTCATATAACAGTTGAGCAACACAACACATACATAACAcagaatgtttataattataaagagtcAATAAATTACTCCCCTGTTGAAGAATTTGAGCACAAAAAGTTCAGAAAAGTTCAAGTGAACGAGTCTGGTCAACCTGCGCTGGTAGATCAAAATCTGTATGAAGACGATGAGTTTGAATGCGGTGTCTTTCTATCTCAGCTACCCGAAGAGATAATGAATGAGAAAGAAAATAAGGCTAGAGAGGAGCTTAAGTACATTGGTATACAAAGTGAGAATGATGCCTTAAAACAGCTTATGTCGTCTGACATTCAATCCATGTCGAAACAACAGAAAACAATACTTTACTTGGGCCATGACTCACACTATGGTCAAACAATACAGAAAATTGCAGTCAATGATCCTTCCTTACAATGTGTTGATAGCGGCAAAGATAATGAAGTTGTAGAAAGTCAACCAAATCAAAAGAAATATCAATGTGATAAGTGCAAGCAGATATTTGACCAAATAACCACATTTAAGCAACACATGGTCGGTAGCCACAAGAGTCCAAAGATCCCTATCCTAGGTACAGATGCCGTAAGCGAAGTAAAATTTATGTGCACGGACTGTGGCAAAATGCTTAAAAACCAGACAAAGTTTGAACTCCATTGCCTAGGTCATGGTGATCCAGAACTAGAATGCAATAAGTGCCACAAGGTGTTTGCATCAAAATTCACCTTAAGGAATCACCGTAAGATACATCAAAGAAAACACCAATCGTCCAAACATTCTGAATTGGAACTCCATAAAATATGTCACAAAGAAAGTGATGTTAAAGAGGCAAGTGATACAGAATTTAATCTTTCTCTTGAAGATGATTTGATTAGTGAAAGTGATACCTTAACTCCGCCTCCCGAAGACTATCTCTTAAAATCTGATATCGATGAATCATCCAAAATGGACGAAATTAAAAAAGCTGATTCAGTGATAGCTAAAGTGATGTCAAATAAGATATTTCTACTTCATTCAAAGAAAGCACGGAGACACAAGAGATATAAAAAGACATGTGACGTTTGTTACAAAACATTCGACCGAGTCGGCGATTTGAAACGTCACCTAATTGAGCACGTAATTAGAAGCACACTCGCCAAGACACCAGTCAACAAGAACGGCACCCTTACTATACAGTGCGAGGTCTGTCAAGCCGAAACCTTCACTAAGGTAGATAGATATAAGGCTCACTTACGCGAACACGCTAAACTCACCTTATACAAATGCACCTTCTGTGACAAATCCTTTAGCGATTCCAGCAATTTCTCCAAGCATAAAAAGATCCATGGCACTACGTTCTTCCAGTGCGATCTTTGCCAAAGGAAATTCAACTCTAAGAAGATGATATCGCAGCACATGGAATATCACAACAACAATTCGCCGATACCGTGCTTCTTTTGCAATAAGGAGTTCCATTTTCCATCGATGCTGAACAAGCATGTCAAATGTGCACACACGCGCGAAATGTCACGGTTCAGGTGTCGGTTCTGTCAcgattatttcaaaacattgaaAGAGAAGTGGGATCACGAATGGAGAATACACAAGGTTAGAAAAATGATCGTCGATTGTCTTATTTGCGACTCCAAATTCAGGAAATACTCTGAATTGAAACGGCACTGTAACGATGTCCACGATATGGAAATTCCTCCCGCGAAAAAGTTGTTAAGGAAAAGAAGATCACTTTAA
Protein Sequence: MEEEIYITDPEGVYPVLLIPKKCTTLETNCDATDNVFIDVNITSPDTEGNETCIYSGFCNVKLIDNYDVNIHEADSNGHSSDNNDNNSVPIIVTEAGNQAYPPYSQSQVWIDPARSPFVYNSYDTVESQEHYSVYHQSHSSHITVEQHNTYITQNVYNYKESINYSPVEEFEHKKFRKVQVNESGQPALVDQNLYEDDEFECGVFLSQLPEEIMNEKENKAREELKYIGIQSENDALKQLMSSDIQSMSKQQKTILYLGHDSHYGQTIQKIAVNDPSLQCVDSGKDNEVVESQPNQKKYQCDKCKQIFDQITTFKQHMVGSHKSPKIPILGTDAVSEVKFMCTDCGKMLKNQTKFELHCLGHGDPELECNKCHKVFASKFTLRNHRKIHQRKHQSSKHSELELHKICHKESDVKEASDTEFNLSLEDDLISESDTLTPPPEDYLLKSDIDESSKMDEIKKADSVIAKVMSNKIFLLHSKKARRHKRYKKTCDVCYKTFDRVGDLKRHLIEHVIRSTLAKTPVNKNGTLTIQCEVCQAETFTKVDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMISQHMEYHNNNSPIPCFFCNKEFHFPSMLNKHVKCAHTREMSRFRCRFCHDYFKTLKEKWDHEWRIHKVRKMIVDCLICDSKFRKYSELKRHCNDVHDMEIPPAKKLLRKRRSL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01506664;
90% Identity: iTF_01078549;
80% Identity: -