Basic Information

Insect: Nymphalis c-album
Gene Symbol: -
Assembly: GCA_905332345.1
Location: CAJOBY010000030.1:878690-894341[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00055 0.042 14.8 7.1 1 23 374 396 374 397 0.95

2 10 0.063 4.8 8.3 1.8 1 23 401 423 401 423 0.97

3 10 0.057 4.3 8.4 1.8 1 23 428 451 428 451 0.97

4 10 0.018 1.3 10.0 0.2 1 23 455 478 455 478 0.93

5 10 0.0099 0.75 10.8 0.5 3 21 492 510 491 515 0.93

6 10 1.3 1e+02 4.1 0.4 2 23 568 590 567 590 0.94

7 10 0.0086 0.65 11.0 0.7 2 20 606 624 605 627 0.91

8 10 0.00024 0.018 15.9 0.3 1 23 633 655 633 655 0.97

9 10 4.4e-06 0.00034 21.4 2.6 1 23 662 684 662 684 0.97

10 10 4.8e-05 0.0036 18.1 4.1 1 23 690 713 690 713 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00055	0.042	14.8	7.1	1	23	374	396	374	397	0.95
2	10	0.063	4.8	8.3	1.8	1	23	401	423	401	423	0.97
3	10	0.057	4.3	8.4	1.8	1	23	428	451	428	451	0.97
4	10	0.018	1.3	10.0	0.2	1	23	455	478	455	478	0.93
5	10	0.0099	0.75	10.8	0.5	3	21	492	510	491	515	0.93
6	10	1.3	1e+02	4.1	0.4	2	23	568	590	567	590	0.94
7	10	0.0086	0.65	11.0	0.7	2	20	606	624	605	627	0.91
8	10	0.00024	0.018	15.9	0.3	1	23	633	655	633	655	0.97
9	10	4.4e-06	0.00034	21.4	2.6	1	23	662	684	662	684	0.97
10	10	4.8e-05	0.0036	18.1	4.1	1	23	690	713	690	713	0.95

Sequence Information

Coding Sequence: ATGCGGTGCTGTGTGCCTTCTTGTAAAAACGATTCTAGAAATATCTCTAAATCTCAAGGAATAACATTTCATGTCTTTCCAACGGAACCTGCTTTACGGGCCTCGTGGTTGAGAGCAGTGGGAAAGGACGCATGGTCTCCGAGAGAGAGGAGCGCTGTGTGCTCGGAACACTTCTTGTGCGATGATCTCTATGAAACAAAGAGTGGATTGAGAAAAGTGAGGACTGGAGCTGTACCCATTGTGATGCGAaTTTGCAGAATATGCCTCGGTATGGATACGAAGCTGTATCCCATGGGGATATACAAATTGGACAAAGCATATGAAAATCTGACCGGAGTCATGTTGTCCGGAGACGAGCTACCGCAGAAGTTGTGCGCGGACTGCGCGAAGAGATTATTGAATTGTGATCAATTGCGATCGAAGAGTTTAACAGCGAACTTGTTGCTCTTGGAGTTACTTAAGAAAGAGGAGATTCTAACAGTACataatatcaatacaataaaCCGCGAGCACAGCCAGTTAACATCGGAACTTATGAAAAAAACATTCGAACCCGACCACTGCGATCTTTACATAGAATATTCGGAGAACCAAGACGTACAGACGGACAAAAATCCCATACAGGAAACGGAAACGGAAAATTTGTACGTGAAGAGCGAGAGAGATGAAGATATATACACGAATGAAATATTCACTGAGGCCAGAGATGAAGTTAATATGAACGGTGATGAAATAGATGATGAAGATACATTCGTAGCGACAAACTATTCGTCGGACGACAGTCTACCGCTCGAGACTCAAAGGAAGAAAGTGAAGAAGATAAAAACGAAAGAGAAGAAATTGAGGAAGAAGATAAAAGATAAACCTGAACCGAAGATAGATAGAAGAAGGAAACCGTTCCTGAACGACGATCTGAACGAAACGCTGTTCACGATAACTGATTTAACGTTTGATGAGCAAGTCGCTGAAATACATAAGAGACAGGAGTCGTCGAATTATAAGAACTCAATATCTTATTTAGCTGATGAACCGATCTTCAGCTGTCCAATTAGCGGTGGGTTTGGCTGTGGGAGGGTGCGAAAGTTGATAATTGAAGAGACAAACAAACAATGCGGCGAGTTCGAGTGCGACATCTGCAAGACGCACTTCAAGCACCCGCACGCGCTGCGGAAGCACATCACGGCGCACCACACGCAGCGGTTCAGCTGTAACCAGTGTCCGTACGTCACGACGCACCGgcaGACAGCTAGACTGCACGAGAGATGGCACAAGGGTACGAAGTATCAATGTCCTCATTGCCAGGATGAATTCGTtaaGTTCACAACGTACATGGGTCACATACGGATCAAGCACCCGTCGGACTTTGTGTGCGCGCTGTGCGGGTACTCCTTCGTCAGCGAGAAAGGAATCGAACTGCACAAGAAACTCAAACATCGTCTCGACGACGGACAGATACCCGAAGACGGCCCGCTGTGCGACATGTGCAACGTGAGGTTCGTGTCGCAGGAGGCGTACAGGAGGCACCTGCACGTCTCCGCGCGGCACAACACGAGCGATTCtgaTTCGAAAGAGTCGAACAAACCGAGAAAGGGGAGATCTCGTATCGTCAGAGAGAAGAAGAGAAGTGTAGACGAGGGAGACGACGACGACGAGAAGAAGAAAGTTTACCCGAGTCAGATGAGGAAGGCAGAGGGTCCGATACCATGCGAACAGTGCGGTCTCCAATTAGAAGATTCGAGAGCGTACCACGGACATTTCAGACGGATGCATCCTGATAAGAATCGTACCAAGTACCCATCGATGAAGTCGCCCTGTATGTGCGAGGTGTGCGGGAGAATGTTCCAAAGCTACGCGCTGCTGAAGGATCACCGCTGGGTGCACACGGGCGAGCGGCCGTTCGCGTGCGAGTCTTGCGGGAAGGCGTTCCGTATGCGGCAGCGACTCGTGGCGCACAGGAGGGTGCACGCACCAAGACGGGCCGCCTTCGTGTGCGCGCTCTGCGGGAAGAGCTTCAGCACGCACAGCAACCGCCAGCGACACATGTTCATCCACACGGGGCTGAAGCCGTTCAAGTGCGAGATGTGCGGGAAGTGCTTCAAGCACGCGAGCGAGAAGCGCGCGCACATAACGTACGTGCACCTCAAGAAGCCGTGGCCGAAACGAGCGCGCGGGAAGCGACGGACGGACAGACCGGGACAGATGGGGCAAGGTTCGCTGCCGGCGGGAGTGAGCGAGATGGACATAGCTCAGCCCATGTGGCCCAATTGTGACCCCAAAATGGGTGACATGAACAATATCATAGACGATaaacctatttattataatttgaaaatatag
Protein Sequence: MRCCVPSCKNDSRNISKSQGITFHVFPTEPALRASWLRAVGKDAWSPRERSAVCSEHFLCDDLYETKSGLRKVRTGAVPIVMRICRICLGMDTKLYPMGIYKLDKAYENLTGVMLSGDELPQKLCADCAKRLLNCDQLRSKSLTANLLLLELLKKEEILTVHNINTINREHSQLTSELMKKTFEPDHCDLYIEYSENQDVQTDKNPIQETETENLYVKSERDEDIYTNEIFTEARDEVNMNGDEIDDEDTFVATNYSSDDSLPLETQRKKVKKIKTKEKKLRKKIKDKPEPKIDRRRKPFLNDDLNETLFTITDLTFDEQVAEIHKRQESSNYKNSISYLADEPIFSCPISGGFGCGRVRKLIIEETNKQCGEFECDICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCALCGYSFVSEKGIELHKKLKHRLDDGQIPEDGPLCDMCNVRFVSQEAYRRHLHVSARHNTSDSDSKESNKPRKGRSRIVREKKRSVDEGDDDDEKKKVYPSQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFACESCGKAFRMRQRLVAHRRVHAPRRAAFVCALCGKSFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRARGKRRTDRPGQMGQGSLPAGVSEMDIAQPMWPNCDPKMGDMNNIIDDKPIYYNLKI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00825075;
90% Identity: iTF_01078276; iTF_01078539; iTF_01078277;
80% Identity: iTF_01078276;