Basic Information

Insect: Nymphalis c-album
Gene Symbol: RREB1
Assembly: GCA_905332345.1
Location: CAJOBY010000023.1:4312967-4330094[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.3 3.3e+02 2.5 1.2 1 12 94 105 94 117 0.79

2 17 1.9 1.4e+02 3.6 0.2 1 12 152 163 152 173 0.83

3 17 0.026 2 9.5 0.1 1 23 300 322 300 322 0.97

4 17 0.0014 0.11 13.5 0.4 1 23 331 353 331 353 0.99

5 17 0.00086 0.065 14.2 2.0 1 23 359 382 359 382 0.97

6 17 4.3 3.3e+02 2.5 1.2 1 12 425 436 425 448 0.79

7 17 1.9 1.4e+02 3.6 0.2 1 12 483 494 483 504 0.83

8 17 0.026 2 9.5 0.1 1 23 631 653 631 653 0.97

9 17 0.0014 0.11 13.5 0.4 1 23 662 684 662 684 0.99

10 17 0.00086 0.065 14.2 2.0 1 23 690 713 690 713 0.97

11 17 0.0035 0.26 12.3 1.6 1 23 1065 1088 1065 1088 0.96

12 17 0.00029 0.022 15.7 1.3 2 23 1281 1302 1280 1302 0.97

13 17 0.03 2.2 9.3 5.3 1 23 1308 1331 1308 1331 0.97

14 17 0.1 7.6 7.7 0.8 1 23 1362 1386 1362 1386 0.90

15 17 0.45 34 5.6 0.2 1 23 1408 1431 1408 1431 0.93

16 17 0.026 2 9.5 0.3 2 23 1471 1492 1470 1492 0.92

17 17 0.033 2.5 9.2 5.3 1 23 1498 1520 1498 1520 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.3	3.3e+02	2.5	1.2	1	12	94	105	94	117	0.79
2	17	1.9	1.4e+02	3.6	0.2	1	12	152	163	152	173	0.83
3	17	0.026	2	9.5	0.1	1	23	300	322	300	322	0.97
4	17	0.0014	0.11	13.5	0.4	1	23	331	353	331	353	0.99
5	17	0.00086	0.065	14.2	2.0	1	23	359	382	359	382	0.97
6	17	4.3	3.3e+02	2.5	1.2	1	12	425	436	425	448	0.79
7	17	1.9	1.4e+02	3.6	0.2	1	12	483	494	483	504	0.83
8	17	0.026	2	9.5	0.1	1	23	631	653	631	653	0.97
9	17	0.0014	0.11	13.5	0.4	1	23	662	684	662	684	0.99
10	17	0.00086	0.065	14.2	2.0	1	23	690	713	690	713	0.97
11	17	0.0035	0.26	12.3	1.6	1	23	1065	1088	1065	1088	0.96
12	17	0.00029	0.022	15.7	1.3	2	23	1281	1302	1280	1302	0.97
13	17	0.03	2.2	9.3	5.3	1	23	1308	1331	1308	1331	0.97
14	17	0.1	7.6	7.7	0.8	1	23	1362	1386	1362	1386	0.90
15	17	0.45	34	5.6	0.2	1	23	1408	1431	1408	1431	0.93
16	17	0.026	2	9.5	0.3	2	23	1471	1492	1470	1492	0.92
17	17	0.033	2.5	9.2	5.3	1	23	1498	1520	1498	1520	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCCGCCAGTGCTCCCGCGCCACCCGCGGCCGAGCCGCCTGCATCCCAACAAATCAAAACAGAAGTGATCAGCGAGGCTAAAGTCGAAGCGGATAATCAGGAGGAGGAAGAAATGAAGATTGAACATCATGAGACGCGCGCGACGCGCACCACTAGTATTGATAGTGATAACAGATCAGACAGGAGCGAGGAAGAAGACTGCAGACGCGCCCGAAAGAGAGCCGCATCAACTTCACCTTCCCCTATTCCATTGGACAAGAGAACAGCTCGGTTCGAATGCCCCAAGTGTTTCCAACGGTTCGATTCGATAAATGCATTCGATTTCCATCGCTTCACAGCGCACGGGGATGATTCAAGATCCGGTTATGACGATTACGTTGACTACTCCGCTAAAAAAAATCCAGATATGTTACGAAGTTCGCACGTATCTATCTCAGAGCAACGTTTTCGTTGCGAATACTGTTCACGCGATTTTCCATCCGGACAAATCTTGGATATTCACAGAAAAACGTGTACATCATCCACTCGGATATCCAGCCCTGATCGTGACAGGAGGGAAGATTTTTTCGCTAAACTGGATCTAAGAAATAGGTCTTTTGGTATACCAGGTACCTTAACTCCACCGATGGATCGATTCACGCCTAAATTTGATGATGGACATCTTACTAATGGAATAAGGCATATAGATGCTGCAAGGGACCTGGCTGATATTCAATCCATTCTTAACGTCACTTCTGCTGGAAGTCTTTTGGAAAGACTGACAGGGACGAGGGTTGCATTGGAAAGTTCAGTATTAACACCCCCCGATACAATCGTTAAAGAACGTGAACAGGAAGAAACACAAGATAATTTCGCGGCAGAGTTCAGGCGAATGAAATTGCGAGGTGAGTTCCCTTGCAGGCTGTGTCCCGCTAAATTTCCAAACCTTCGCGCTTTAAAAGGACACAACAGAGTACATCTTAGTGGCACTGGTCCCGGCCCGTACCAGTGCAACATGTGTCCCCATGCATCTTTGGACAAAGCGGCTCTTGTTCGGCATATGCGGACACACAATGGCGACAGGCCTTATGAGTGCGCTGTATGCAATTACGCATTCACAACAAAAGCTAATTGTGAACGTCACTTACGTAACCGTCACGCCAAAGTAACAAGAGAGGACGTGAAACGTTCAATAATTTATCATCCATCAGAAGATCCTAATAACGATGAAAGAGCCGCATCAACTTCACCTTCCCCTATTCCATTGGACAAGAGAACAGCTCGGTTCGAATGCCCCAAGTGTTTCCAACGGTTCGATTCGATAAATGCTTTCGATTTCCATCGCTTCACAGCGCACGGGGATGATTCAAGATCCGGTTATGACGATTACGTTGACTACTCCGCTAAAAAAAATCCAGATATGTTACGAAGTTCGCACGTATCTATCTCAGAGCAACGTTTTCGTTGCGAATACTGTTCACGCGATTTTCCATCCGGACAAATCTTGGATATTCACAGAAAAACGTGTACATCATCCACTCGGATATCCAGCCCTGATCGTGACAGGAGGGAAGATTTTTTCGCTAAACTGGATCTAAGAAATAGGTCTTTTGGTATACCAGGTACCTTAACTCCACCGATGGATCGATTCACGCCTAAATTTGATGATGGACATCTTACTAATGGAATAAGGCATATAGATGCTGCAAGGGACCTGGCTGATATTCAATCCATTCTTAACGTCACTTCTGCTGGAAGTCTTTTGGAAAGACTGACAGGGACGAGGGTTGCATTGGAAAGTTCAGTATTAACTCCCCCCGATACAATCGTTAAAGAACGTGAACAGGAAGAAACACAAGATAATTTCGCAGCAGAGTTCAGGCGAATGAAATTGCGAGGTGAGTTCCCTTGCAGGCTGTGTCCCGCTAAATTTCCAAACCTTCGCGCTTTAAAAGGACACAACAGAGTACATCTTAGTGGAACTGGTCCCGGCCCGTACCAGTGCAACATGTGTCCCCATGCATCTTTGGACAAAGCGGCTCTTGTTCGGCATATGCGGACACACAATGGCGACAGGCCTTATGAGTGCGCTGTATGCAATTACGCATTCACAACAAAAGCTAATTGTGAACGTCACTTACGTAACCGTCACGCCAAAGTAACAAGAGAGGACGTGAAACGTTCAATAATTTATCATCCATCAGAAGATCCTAATAACGATGAAGTAAATTCTAAAATTGCTCGAGAAGAGGTTAAGAGGTCGCTAGCATTCCACACGCCAGAGGTAGAAAGACGCAGCGAACCCGCAGTTCGAAGTACAACACCACTGACACATTATAATCCCAGTTTCATAACAGAGAGACATCCAGTTACTTCTCTCACAAAAGCTTTACCCGATACACCCGCTTTAACCCCGAGGGAGACGGATCCGCCAATGCCCAGAATCAAAGTTAAGGGTATCGGACAACTCACGCAAATACCTGAATTTAGAACTCCCGATCTCTCATTTAAGACCAATGATCTACTACCGGAAACGTATAATGATGATGCTCCAGTAGACCTAAGTACGAGTGACAACAATAGTTGTGATGTGTTAGATCTTAGCAAGAAAAAACGCGATACCGACGATGATGAACCTAAGGCACCATCGCGCCCCGTATTTGACACCTCACCGTCTGTTGCGGCATCAGCAGCCGCTACGGCTTACGAAAAAACCAGATTAATTCTTGCTCAGCAAAGACTTTTCGAAAACTCACTACCTAAACTTGATCCTTCTTATTATGCAACTCAGCTGTCTCAACTTTATGCCAGTGCAGTGCCAGGCCTGCCGGGTTTACCCATCCCACCTTCATTTCCTATCAACCCATACTTTCTACAGACCTCTTTTTTTCCTCACCCAACCGATTCCCAAGAGATAACCGAAATGAAACAACGCATACAAAAAGAAATCATCCGAAGCCTTAGCATGTCTGGAGGTAGGTTGGTAACGAACGAATCGGAAACACAACCCAAACAAGAACCTGAAGAGGAAGAACAAAAGCCAATCCAAGTTTCTACGACGCCAACCCCACCACCTCATTCAGAATCTCCACGTcctataacaaataataatcttgTTTCTCAAAATGATTCCGTTAAGATGGTGATAAAAAACGGTATACTTATGCCTAAGCAAAAGCAAAGACGTTATCGTACTGAACGGCCGTTTTCCTGTTCTCAATGTTCAGCTCGATTTACACTTCGTTCAAATATGGAACGTCATGTAAAGCAGCAACATCCTCAACATTGGAGTGTTAGGCGTCCAACACCAAGAGCTCCCCCACCATATCCTACGCCTGACACACTAGCTGATCGAGTCAAGTATGCGTTGTTAGCACGTCACCTGGAAAGACCATTGCAAACGTCTGATCGATCACCTGTAAGAAGAGACTCCGACGAAGTTGCCGACAATGAGGAAGACGAAGACGATACACTAGTTATCGACGAGGAGCCAGATGATCAGAAATTAGATGAACATTCAGCTGCTCATAGAGCTGCTGCGGAAATTCTAATGGCCACACGTCAGCAAGAACTAAATAAGGACTTTGATCTTAAGATAGCTGGAAACCTTATCAATAAACCAGTCCCAATTACTTCTGAAAAAATCGAGGCTGGAGTAGACGGTGTTTCGAGCCAAGATAACGTGGTGCCCGTAGTACCCACGCGAAGTGATGAAGAAGAGGATGAGGAGGGCCTGGTCGCATCCACTAGCGAGGGAAACAACTCTGGAAGCGATGAAAATAAGTCAGAATCGGATACTGGTATACAACCTCCAAAAAAGAAGTCAGCTTACAGTCTCGCACCGAACCGCGTATCGTGCCCTTACTGTCATCGCAAATTCCCCTGGTCCTCATCTCTCCGAAGACACGTCCTTACTCACACAGGGCAGAAGCCGTTTAAATGTCCCCACTGCCCTCTCCTCTTTACCACCAAGTCTAACTGCGACCGCCACTTGCTCAGGAAACATGGAGGATCAGCTAAAGCCATATTGGCGGAACCTATTCAAGATTCCATGACGCCACCACAAACGAATGATAGAAGTGTGCCAGAAAGACCTTTTAAGTGTGCCTCGTGTCCGACGAGCACTTTTTCGTCTCTGGAAACGCTAAAGAAACACATGGCGTCTCGACATGGGACGGGTGATTCGCAACCAAGTTCTCCGAACCCTGATGAAGAAGTCGATGGAAGCTTAGTCTTCAAATGCCATCTCTGCGAGGGTTCGTTTGGTGACAGAACAGCGGCCTTGGAACATCTTGCGTCAGCGCATTCAGCTGAGTACGAACAGTTGGTTAGCAAGGGTGCATTGGACGCGGCTAGTGATCGCAGCGAGAGCGCAGATGATGATGATAGAGGAAAATTCCCGGATCATGCGAACAGAAAGGTTGTCTGTGCCTTCTGCATTCGTCGCTTCTGGTCAGCGGAGGATTTGCGGCGTCACATGCGTACACATTCCGGTGAGCGACCGTTCGCCTGTGACCTGTGCAGGCGACGATTTACATTGAAGCACAGTATGTTGCGACACCGGAAGAAGCACAGGGAAGAAACCGATGATGAAGAGTCCTCGCCAAGGGAAGACACATCTAATGGttATCGCTACCAAGAAGACGATGGCTCCGGTAACGAGGTCCCATGCAACGTGAACAACAACAACTCGCCACCCGCTGCGCCATACGACAAAAAACTCAAACTGGAGATGACATCGCGTAAATATTCATCCGAAGCAGAAAATGACACCGAAAATGGAGGTGACCTGATCGGAAAACTTCTTGGTATCCCCGACAAGACCATCATCAACAAACTACTCTCTTCAGCAGACGAAGCCGCGAAATTCTTAGGAGTAAACAAATGA
Protein Sequence: MQGAASAPAPPAAEPPASQQIKTEVISEAKVEADNQEEEEMKIEHHETRATRTTSIDSDNRSDRSEEEDCRRARKRAASTSPSPIPLDKRTARFECPKCFQRFDSINAFDFHRFTAHGDDSRSGYDDYVDYSAKKNPDMLRSSHVSISEQRFRCEYCSRDFPSGQILDIHRKTCTSSTRISSPDRDRREDFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDDGHLTNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALESSVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDERAASTSPSPIPLDKRTARFECPKCFQRFDSINAFDFHRFTAHGDDSRSGYDDYVDYSAKKNPDMLRSSHVSISEQRFRCEYCSRDFPSGQILDIHRKTCTSSTRISSPDRDRREDFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDDGHLTNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALESSVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKIAREEVKRSLAFHTPEVERRSEPAVRSTTPLTHYNPSFITERHPVTSLTKALPDTPALTPRETDPPMPRIKVKGIGQLTQIPEFRTPDLSFKTNDLLPETYNDDAPVDLSTSDNNSCDVLDLSKKKRDTDDDEPKAPSRPVFDTSPSVAASAAATAYEKTRLILAQQRLFENSLPKLDPSYYATQLSQLYASAVPGLPGLPIPPSFPINPYFLQTSFFPHPTDSQEITEMKQRIQKEIIRSLSMSGGRLVTNESETQPKQEPEEEEQKPIQVSTTPTPPPHSESPRPITNNNLVSQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPTPDTLADRVKYALLARHLERPLQTSDRSPVRRDSDEVADNEEDEDDTLVIDEEPDDQKLDEHSAAHRAAAEILMATRQQELNKDFDLKIAGNLINKPVPITSEKIEAGVDGVSSQDNVVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGIQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIQDSMTPPQTNDRSVPERPFKCASCPTSTFSSLETLKKHMASRHGTGDSQPSSPNPDEEVDGSLVFKCHLCEGSFGDRTAALEHLASAHSAEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREETDDEESSPREDTSNGYRYQEDDGSGNEVPCNVNNNNSPPAAPYDKKLKLEMTSRKYSSEAENDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080254;
90% Identity: iTF_00825108;
80% Identity: -