g9561.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000016.1:1470936-1473828[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.033 2.5 9.2 0.7 3 23 73 94 71 94 0.89 2 17 3.3 2.5e+02 2.9 0.2 3 23 121 142 119 142 0.88 3 17 0.77 58 4.9 0.2 2 23 165 186 164 186 0.93 4 17 0.0095 0.72 10.9 0.1 1 23 190 212 190 212 0.97 5 17 9.8e-06 0.00075 20.3 1.6 1 23 217 240 217 240 0.98 6 17 0.00012 0.009 16.9 2.5 2 23 278 300 277 300 0.95 7 17 1.2e-05 0.00093 20.0 3.4 1 23 306 328 306 328 0.98 8 17 0.0016 0.12 13.3 0.3 1 20 334 353 334 356 0.94 9 17 0.00015 0.011 16.6 3.3 1 23 362 385 362 385 0.97 10 17 0.037 2.8 9.0 0.5 1 23 462 485 462 485 0.91 11 17 0.073 5.6 8.1 0.2 2 23 512 534 511 534 0.95 12 17 0.014 1.1 10.4 2.5 2 23 557 578 556 578 0.95 13 17 0.75 57 4.9 0.0 1 21 582 602 582 604 0.86 14 17 7.2 5.5e+02 1.8 1.8 1 23 639 662 639 662 0.77 15 17 0.00033 0.025 15.5 0.6 2 23 670 692 669 692 0.95 16 17 0.00043 0.033 15.1 1.4 1 23 698 720 698 720 0.97 17 17 6.9e-05 0.0053 17.6 3.0 1 23 726 749 726 749 0.98
Sequence Information
- Coding Sequence
- atgcaggtttcctggcgatgttttccttcacagtcaaGTATCCGAACGATTAAAATCGAAAGGCGGATAGCGACACCTCGCGTGGAGTTGAAGATCGTTCGAAGCCATAAAGAGCCCCACCAGTCCGAATCAAAGAAAAATCAACATAATCTTAAGTTGATCTTGTTGAATTCGAACGCTAATCCCATTAGGAATAAGGACAGCCTCGGCTACGGCTGCGCTTTCTGCCACGAACAGTTCCCAGAACCGACTAacctaaaaaaacatttcctaGATGAACATAACAGcgatagattaataaaatttatgtcaaGTAAATTATTTGATCACGTGGTCAAATTAGATATAACATATCTGAATTGCGCGCTGTGTAACAAGGATATACTGAAACTAGAAGACCTGATGACACATTTGAAAACTGAGCACGGGAAAGATATTCACACGGATATAAAGAGTTCGATAGTTCCATTCAGATTCGATACGCCAGAATTACGTTGTGCCGTCTGCTCAGctgaatatttgaattttaaacttttacaagAGCATATGAACTCGCATTTCGGTAATCACATATGCCCGGTTTGCGGTGGTGGTTTCATGACGGAACGACTGCTTGGAACGCACGTTAGGAGGCATAAAACTGGCGAATTTAAATGCGACGATTGCGAAAAGATATTTGGCAATAAGGAGAAGTTGAAAGAACACCAAAAGAGAACTCATCTTGGTTTAGGTAAACGGAACAAGTGTTTGGTATGTAATGAGAGGTTCCTAGATTATTGGAAGAAAGTCGACCACATGGTAAAAGTGCACGGAGCTCCGCCCGTTGTACTGAACTGCCATGCATGCGATCGAACATTTCGGAACCAGCGGGCACTGGCGAGGCATACGAAGAAGGACCACCTATTGGAGAGGAAACACAAATGCGAGGAATGTGAGATGAGATTTTTCAGCAAGAGCAGCTTGCAACGGCATATGGCGAAGCACACGGGCGCACGTGAATTCCGAtgtgatatatgtttaaaggCGTATGGGCGGAAGAATACGCTGAGAGAACACATGTGGATACATGCGGACAACCGAAGGTTCGCATGTGCGCACTGTGGACAAGCATTCGTCCAGAAGTGCAGCTGGAGGAGTCACATGCGTTCCAAACACGgTGATCTACTGGACGAGAAGAGAACAGTTATCAAACTAACATCACGTCATCCAAAGGAAGCTATCAACGTACGTAAAGGAAAGATGATAAGAATAACATTACAGAAAGGTTTGAAAATGAAAGAGACATTATCACTTATCACTGAAGCTGAGAAACAccagaataatataaaagaaattttattaaattcaaacgcGACACCAATCCGATGTCGTGGGGGTATTGGATATGCTTGTTGCTTTTGCACTGAACAATACCCAGATCCAGCTGATTTAAAGCAACACACCATAGACAACCACAGCGATGCAGATAAAGCAAATTTCATGAAGGGTAAAGATATGCACAGCTATTTCGTCAAACTTGACATAACAGATTTAAGATGCAAACTTTGTGATCAAAACATAGacaatatagataaattagTCAAACATCTGCAAATTAATCACGATAAGAAACTGTATACGGATATAAAGGATCACATACTACCTTTTAAATTTGCGAGCGAAACGCTATGTTGTTTTATCTGTTCCAATTTCTTCAACACATTCAAGGCTTTGCAGGAACACATGAACGTGCACTATAGGAATTATCTTTGCGCTGTTTGTGGGGCGGGATTcgttaataagaatattttattgagaCACGGCGATGCTCACAAAATTGGTACGTTCAATTGCGAGGAATGTTGCAGAACATTCGATACGGCACGAAAGAAGCTCCTTCATGACAGATCGTACCATTCGGGGATGAAGTTGCCCCACAAATGTGGTTATTGCTTGGAAAGATTCAAGGAAGTCTGGAAGAAATACGAACACTTATCCAAGGTTCATGGGATAAAGAGTCCAGGTATCAAGTGCCAGGTTTGCGATAAGAGTTTTGAGACGAAGAATGCTTGGCGGTTGCACACAACGAGGGTGCATTTGTTGCAAAGACCGCACAAATGCAGTGACTGTGATATGGAGTTTTATGCGAAGAGAGAACTCGAAAGTCATATGGTAAAACATACGGGTACTAGGGAATTCAAATGTGATATTTGTTTCAAATCATACGGGAGACAGAAGACGTTGAAACAACATACGAAACGAGTGCATTCCTAG
- Protein Sequence
- MQVSWRCFPSQSSIRTIKIERRIATPRVELKIVRSHKEPHQSESKKNQHNLKLILLNSNANPIRNKDSLGYGCAFCHEQFPEPTNLKKHFLDEHNSDRLIKFMSSKLFDHVVKLDITYLNCALCNKDILKLEDLMTHLKTEHGKDIHTDIKSSIVPFRFDTPELRCAVCSAEYLNFKLLQEHMNSHFGNHICPVCGGGFMTERLLGTHVRRHKTGEFKCDDCEKIFGNKEKLKEHQKRTHLGLGKRNKCLVCNERFLDYWKKVDHMVKVHGAPPVVLNCHACDRTFRNQRALARHTKKDHLLERKHKCEECEMRFFSKSSLQRHMAKHTGAREFRCDICLKAYGRKNTLREHMWIHADNRRFACAHCGQAFVQKCSWRSHMRSKHGDLLDEKRTVIKLTSRHPKEAINVRKGKMIRITLQKGLKMKETLSLITEAEKHQNNIKEILLNSNATPIRCRGGIGYACCFCTEQYPDPADLKQHTIDNHSDADKANFMKGKDMHSYFVKLDITDLRCKLCDQNIDNIDKLVKHLQINHDKKLYTDIKDHILPFKFASETLCCFICSNFFNTFKALQEHMNVHYRNYLCAVCGAGFVNKNILLRHGDAHKIGTFNCEECCRTFDTARKKLLHDRSYHSGMKLPHKCGYCLERFKEVWKKYEHLSKVHGIKSPGIKCQVCDKSFETKNAWRLHTTRVHLLQRPHKCSDCDMEFYAKRELESHMVKHTGTREFKCDICFKSYGRQKTLKQHTKRVHS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01080134;
- 90% Identity
- iTF_01080134;
- 80% Identity
- -