g9530.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000016.1:1308399-1312525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00039 0.029 15.3 1.3 2 23 78 100 77 100 0.93 2 14 3.1e-05 0.0024 18.7 1.7 2 23 124 145 123 145 0.97 3 14 0.081 6.2 8.0 0.5 2 23 150 171 150 171 0.95 4 14 5.3e-06 0.00041 21.1 2.3 1 23 176 199 176 199 0.97 5 14 4 3e+02 2.6 2.2 1 23 243 265 243 265 0.88 6 14 0.00022 0.017 16.0 0.2 2 23 293 315 292 315 0.93 7 14 0.00041 0.031 15.2 6.1 1 23 338 360 338 360 0.98 8 14 0.043 3.2 8.8 0.5 3 23 366 386 365 386 0.96 9 14 0.00056 0.043 14.7 1.5 1 23 391 414 391 414 0.92 10 14 5.8 4.4e+02 2.1 6.7 2 23 424 446 424 446 0.95 11 14 0.0013 0.096 13.6 1.5 1 23 452 475 452 475 0.94 12 14 7.8e-07 5.9e-05 23.7 2.8 2 23 480 501 479 501 0.97 13 14 6.1e-05 0.0047 17.8 4.0 1 23 507 529 507 529 0.98 14 14 0.0022 0.17 12.9 0.6 5 23 539 557 538 557 0.95
Sequence Information
- Coding Sequence
- ATGACAATATCCGAAAGACAAAACGCGGCGATGTTGCTTGAGAATACAACGATAAGACCATTTGTTTACTGTCGATATTTCTTCAAATGCTTTTTCTGTTCCGAGGAACACGCTGAAATAAACGCACTGCTTAAACATAGTTCTACTCATGATATGCCCGCCCATGCGGACATTCTCAAAGACCTCTTACCTAAGGGGAAGCGCACTGTTAAAGTTGATATATctgatttaaaatgtaaactatGCTTTAAGAAATTCTCGAATCTTGACCAAATAAGGAGACATTTAGAACTTGAACATAATAAAATCTTCACCAAGTCTGGTAATGGTATTGTTGCTTATAATTTGAGCTCCAAGGACGGACAATTATCATGTCATATCTGTAACAAAATCTTCCAAACATTTATACTCTTGAATCGTCATATGAACGTGCATTTTAGTAACGCTGTTTGCGAAACTTGTGGCGCCGGTTTTATGACGCATCAAAGACTTATACAGCACAAGGAAATTCACTCGCCTGGTGGATATCCGTGCAATCGATGCAATAAAGTGTATACCACACATTCTAATCTAAAATACCATATAGAAAAGGCACATGAAGtgACGCGTAGAGATCTACCGAGAAGTAGTAAATGGTCGATGACGCTAGCTGAGAGAATAAATGCAgcgcatattttaaaaaacacaacTGTCACGCCGTTCACCTATCTATTGTTTCCGAGCTCctacaaatgtttgttttgcgATGTAAAGTCTTTTGAAATTCACACCTTACTGGAACATTCTAGAAGCCACGTTGTTCCAAATCACAACGAAATTCTAAAAGATATTTTGAAGAAAGGcaagaaaaaaatcaaagtgGATATATCGAATTTGAAATGTAGGATATGCGATCGATCGTTTGTAAGCTTGGAAGATGTTCAGAAACATTTGGCAAATGTACACGAGATCGTCTTCACAGATGCTGGTGTCGGTATGATTTCGTTCAACTTAGAAACGACTAACGAACTATTCACATGTCACATTTGTTCGAAAACATTTCACAGTTTTTTCCTCTTAAACAAACACATAAGCGTACATTACAGTAATGCGATGTGCGACTTATGTGGGAAGGGATTTTTGTCTTATCAGAGATTGATGACGCACCTGCAAAGCCATCGCAACGGGACATACCCTTGTGACAAATGTAAGAAGACCTTCCCGAGTATTTCAAAACTTAAGTACCATAACGATAAACTGCACGGAAATTTGGGTAAAATTAAATTGGCAAAATGTCACAAATGTTTGGCGAGATTCGAACATCACTACGAAAAGATCAAACATTTGAATGAGACACATGGCATTTCATTCACATTCACATGCGATACTTGCAATTCCGTGTTTAAATCTCGTCACGCTCTCAATATGCACGTGGTTAAGGATCACACACAGAATATTTCGTGTGATATATGCAAGAAGACATTTTCGGAACGGTATCATTTGAAAAAGCACATGGCAACACATAGTCAAGAGAGGAATTTTGTATGTCCGTTATGTAAGAAGTGTTATAGATACGAGAAAACGTTGAAACAACATATAAAACTACATAATCCTGATTGGAAATTTTCTTATTCCATCTGTTGGACAAGCTTCTCCACTAAAAGCGATTATAAGAGTCATAAGTCAATGcatttgtga
- Protein Sequence
- MTISERQNAAMLLENTTIRPFVYCRYFFKCFFCSEEHAEINALLKHSSTHDMPAHADILKDLLPKGKRTVKVDISDLKCKLCFKKFSNLDQIRRHLELEHNKIFTKSGNGIVAYNLSSKDGQLSCHICNKIFQTFILLNRHMNVHFSNAVCETCGAGFMTHQRLIQHKEIHSPGGYPCNRCNKVYTTHSNLKYHIEKAHEVTRRDLPRSSKWSMTLAERINAAHILKNTTVTPFTYLLFPSSYKCLFCDVKSFEIHTLLEHSRSHVVPNHNEILKDILKKGKKKIKVDISNLKCRICDRSFVSLEDVQKHLANVHEIVFTDAGVGMISFNLETTNELFTCHICSKTFHSFFLLNKHISVHYSNAMCDLCGKGFLSYQRLMTHLQSHRNGTYPCDKCKKTFPSISKLKYHNDKLHGNLGKIKLAKCHKCLARFEHHYEKIKHLNETHGISFTFTCDTCNSVFKSRHALNMHVVKDHTQNISCDICKKTFSERYHLKKHMATHSQERNFVCPLCKKCYRYEKTLKQHIKLHNPDWKFSYSICWTSFSTKSDYKSHKSMHL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -