Basic Information

Insect: Nymphalis c-album
Gene Symbol: -
Assembly: GCA_905332345.1
Location: CAJOBY010000001.1:6375847-6380529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0016 0.12 13.3 0.0 2 23 196 218 195 218 0.94

2 12 5.1 3.9e+02 2.3 0.2 5 23 227 245 226 245 0.92

3 12 0.00084 0.064 14.2 4.5 1 23 280 303 280 303 0.94

4 12 0.22 17 6.6 0.3 5 23 312 330 310 330 0.94

5 12 0.054 4.1 8.5 1.6 3 23 338 358 336 358 0.96

6 12 1.8e-06 0.00014 22.6 3.7 1 23 366 388 366 388 0.97

7 12 0.00015 0.011 16.6 0.1 1 23 397 420 397 420 0.97

8 12 0.00022 0.017 16.0 0.2 1 23 426 448 426 448 0.97

9 12 1.1e-06 8.3e-05 23.3 2.7 1 23 454 476 454 476 0.98

10 12 0.00017 0.013 16.4 0.8 1 23 481 503 481 503 0.98

11 12 2.9e-06 0.00022 21.9 4.2 1 23 509 531 509 531 0.97

12 12 0.00025 0.019 15.8 4.4 2 23 538 560 537 560 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0016	0.12	13.3	0.0	2	23	196	218	195	218	0.94
2	12	5.1	3.9e+02	2.3	0.2	5	23	227	245	226	245	0.92
3	12	0.00084	0.064	14.2	4.5	1	23	280	303	280	303	0.94
4	12	0.22	17	6.6	0.3	5	23	312	330	310	330	0.94
5	12	0.054	4.1	8.5	1.6	3	23	338	358	336	358	0.96
6	12	1.8e-06	0.00014	22.6	3.7	1	23	366	388	366	388	0.97
7	12	0.00015	0.011	16.6	0.1	1	23	397	420	397	420	0.97
8	12	0.00022	0.017	16.0	0.2	1	23	426	448	426	448	0.97
9	12	1.1e-06	8.3e-05	23.3	2.7	1	23	454	476	454	476	0.98
10	12	0.00017	0.013	16.4	0.8	1	23	481	503	481	503	0.98
11	12	2.9e-06	0.00022	21.9	4.2	1	23	509	531	509	531	0.97
12	12	0.00025	0.019	15.8	4.4	2	23	538	560	537	560	0.95

Sequence Information

Coding Sequence: ATGGCTCTGAACATAAAAGAATTGTGTCGATTATGTGCGAAAAAGGATGAGTTTTCTAAGGATTTAAAcgatgaaaacaataaaaatatactcaaaATGATACAAGACTTAATTCAAATACCAGTTGCTGAACATGATGATTTACCTACAAAAGTCTGTCTAAATTGTGAAGAAAAAATGGTTTCTTTTCAGCTCTTTGTCTTAGAATGTTTTAAAGTGCaggaaaaattaagaaaaatgtgtTTAGGTACATGTGAAAAGTATATCATAAAACTTGAGAAAGATATTGGGCTTAATTTTAATGTACCACCAATTAAGTCAgagGTTAAACATGAATTAACTGCTGACGATTTAGTGAgtGCAATCAATAACGAAGAATCTATGTCAGGTTTTGAAGCTGaagattatgataataaaaatgatagtgATGATGATGAGGATTTGAGTGATGCTATGACACTCGCAACACTAAAAGAACTAAAGTCGAAAAAGagtaaaagaaaagtattaagtGAAACAGAGGAAATTgaactcaaaaaaatattaaagaaatccAATCTTAATATTAGAGATTTTGTCAAgtTAGAATGTAGTGTATGTGAAGAAGCTGTGAAAACGTGGAGTGGATTGAGAGTTCATTATGCCAAAATCCACAAAAGTAAACCAGAGTTGTTTTGTATATGTGGCTTTATCATCAGGTCGAAAAGTGTTCTTTACAAACATGTGTCAGACCACAGGATAGAAAGCAGAAAACTTAAAAACGATACAGAAGAATCAGAATCAGATAAacagaatgaaaataaatattcaagtttAAATGTATCAGATTTTGtaaaCTTCACATGTTCGACATGTCAAAAGCAATGTAAGAGCTGGTATAATTTAAAGTCACACTCTGAACGGGAGCACAAGATAACACCCGTGGTCAATTGTATTTGTGGTATTACTCTTAAGTCTaaatctgttttatataaacacgTACAAGATCACAAGAATCCTAATGTCATCTGCTGTGACAAATGTCCACGAATAACAAAAACAGTAGCTGCCATGAACAAACATAAAATGAGACATGTGCCAAAGTCAGAACGAAAGTTTTGTTGCTCTTCCTGTGATAAAATATTCACTTCAAAAGACTCGTTGAAATCTCATATGCGGGTACATATACCTATAgaagagagaaaaatatatagctGTGAAATATGTGAGCTAAAGTTCACGACCCCGTCGGCGGCCACGTCGCACAAGCGCGTGGTGCACGACAAGATAAAGAGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATCCACAGCGACGACAAGCCCTTCGTCTGCCGGAAGTGCTCCAAGCCGTTCAAAACGTATTCGAACCTGAAGACGCACATGGACACGCACGAGGACACGTCGTACGAGTGCTACGTGTGCAACCGCGTGCTCAACAGCCGGCGCACGCTGCGCAAGCACCTGCTCGTGCACGAGGACAAGTGTCGCCACGTGTGCTCCTACTGCAACAAGGCTTTCAAGCGCCGACAGACGCTAAAGGTTCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCCATTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGTCACGCCGACAAGTTGACGGCGCGATTCTGCTCCTACAACACAAACGTCTCCATGCAAGAGGATTATCTGAAAAATGACGCAGTTCCCGCCAAAGCTGATGTGGAAGCGctttaa
Protein Sequence: MALNIKELCRLCAKKDEFSKDLNDENNKNILKMIQDLIQIPVAEHDDLPTKVCLNCEEKMVSFQLFVLECFKVQEKLRKMCLGTCEKYIIKLEKDIGLNFNVPPIKSEVKHELTADDLVSAINNEESMSGFEAEDYDNKNDSDDDEDLSDAMTLATLKELKSKKSKRKVLSETEEIELKKILKKSNLNIRDFVKLECSVCEEAVKTWSGLRVHYAKIHKSKPELFCICGFIIRSKSVLYKHVSDHRIESRKLKNDTEESESDKQNENKYSSLNVSDFVNFTCSTCQKQCKSWYNLKSHSEREHKITPVVNCICGITLKSKSVLYKHVQDHKNPNVICCDKCPRITKTVAAMNKHKMRHVPKSERKFCCSSCDKIFTSKDSLKSHMRVHIPIEERKIYSCEICELKFTTPSAATSHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYECYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCHWCDERFSYASTLRSHRLRCHADKLTARFCSYNTNVSMQEDYLKNDAVPAKADVEAL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824962;
90% Identity: iTF_01080922;
80% Identity: -