g9566.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000016.1:1492992-1496850[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.027 2 9.5 2.7 1 23 28 51 28 51 0.94 2 17 0.051 3.9 8.6 3.5 3 23 124 144 124 144 0.98 3 17 0.00027 0.021 15.7 0.3 1 23 148 170 148 170 0.97 4 17 0.0058 0.44 11.6 0.6 1 23 177 200 177 200 0.96 5 17 0.0021 0.16 12.9 1.0 2 23 208 230 207 230 0.94 6 17 1.5e-06 0.00012 22.8 0.5 2 23 236 258 235 258 0.97 7 17 1.6 1.2e+02 3.9 0.8 1 23 264 287 264 287 0.86 8 17 0.03 2.3 9.3 0.4 1 14 293 306 293 309 0.90 9 17 0.24 18 6.5 0.0 1 23 403 426 403 426 0.94 10 17 0.003 0.23 12.5 1.5 1 23 496 518 496 518 0.97 11 17 0.0031 0.24 12.4 0.3 1 23 522 544 522 544 0.97 12 17 0.22 17 6.6 1.0 1 23 549 572 549 572 0.93 13 17 0.0049 0.37 11.8 1.5 2 23 580 602 579 602 0.92 14 17 3.6e-05 0.0028 18.5 1.4 2 23 610 632 609 632 0.97 15 17 0.00063 0.048 14.6 1.6 1 23 637 659 637 659 0.95 16 17 3.4e-06 0.00026 21.7 1.8 1 23 665 687 665 687 0.99 17 17 0.001 0.079 13.9 4.6 1 23 693 716 693 716 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAATTTGAGCACGCTCTTGAAATATTCGAACGTAACGCCTTTCAAGGATAGGAACGATGCAGGTTACATATGCGCGTACTGCTTTAAAACCTACCCCGACCCCAACGTTCTAAGGCACCACACGCACTATGACCACGATAAAGAGAAACCCACCTACAAGGCCGCCACAGGAATGAGTAGCTTCGTAGCCTATTTAGATATAGTCGATCTGAAATGTACGTTATGCGATCAGAACATGGACAGCATAAACGTCCTTACCGAGCATCTAGTCAAAACACACGATAAAAAGTATTATCTCAATATCACCGATTATTTCCAACCCTACAAGTTAACCAGCGAACCGGTGATCGGCTGCTGTCTTTGCGACGAGATATTCCACAACATGAAGCTGCTGATGCAGCACATGAACGTGCACTACAGGAATTTCATATGCACGATATGCGGTGCCGGCTTCGTGAACAGCTTCCGTCTGAACCGACACGAGACGACGCACGGGAAGAAGAAATCGAGCTTCGCGTGCCGGCACTGCGGTCAGGTGTTCGCGGCGGAGTCGAAGAAGAAGGCGCACGTGAACACCGAGCACAAGGGTATCGCCGGTGACAGCGTCTGTCAAATATGTAAAGCGAGGTTCAAGAACTACTACCAGAAGACGAGGCACATGATACAAGTGCACAACGTTGAAGGGATAAAGTGCGACGTGTGCGATAAgaagtttaatttgaaatcgAATCTCGTTCTCCACATGAGGAGTGTGCACTTGAAGGAGCGCCCGTACGTGTGCTCCGTTTGCAGCATGGGCTTCTTCATCAAGCGTCACATGCTCGGACATTATCTGGCGACGCACACAAACGAGAGGAAGTTCAAGTGCGACGTCTGCGGCAAGGCGTACGCTACTCAGAACAGCAAACGTGTCGAGGTCGAAAAAAGCTTTGTCGAAATAACGATCAAACAGGAACCCACTTCCGATACCGACGAACAAGATACGAAACTCGAAACGATCGTTAAAATCGAAAACATCGTAACAGATGATAATGTATCGAATAAGGTGACAAAGGGACCTAAAAAAGGTTCAACCGACAAGAAATCAAAGAAAGATCAAATACTCGAAATGGAGAAGCATTTGAAGAATATTAGTACGATACTTTTACATACGAACGCAACCCCGATACGTTACCACGATGGTGCGAACTATGTGTGCGCACTGTGCCCGGAGACGTATCTACTCCCATCGGAATTGAAGATGCACGTTCAAGAGGAACACGACGAAATCGACAAGTCCTCGTTTATGGAAGGCCATAGATTGACCTCGTACGTCGTCAAACTCGATATAACGAATTTGCGCTGTCTGATCTGCCACAGCGAAATCGAAGGCTTCGACCCGATACCCCACCTTCGCACGGCACACGGTAAAGAGCTGCACACCGACATACCGAATCATATATTACCATTTCGATTCGTCGGCAACGGTTTCGACTGCGTCCAGTGTCCGAAGTCCTTCGAACATTTCAAACTCATCCAGGAACATATGAGTATGCACTACGGTAATTATATATGCGCAACGTGTAACGCTCCCTTCGTGAATAAGAGAACGATGCAGAATCACGCGAACCGACACAAAAAAGGGGATTTCCCGTGCAGTCAGTGCGCGAAAATATTCGATACGAACAGAAAGAAGCTGAATCACGAGAAGTACGTGCACGATGGCGATTATAAGAGAAAGAAGTGTCCGTATTGTCAGGAGAAGTTCACGAATTACGCGAAGAAACGATCGCATATGGTACAGGAACACGGCGCGGAACCGCTGTCCGTCAAGTGTGAGATTTGCAAGAAAACGTTCAGTACGAGAGCACGTTTGAGAGGTCACACCAGGCGGGATCACATGGAGTGTCAGCACGCGTGCACCGATTGTGAAATGAGGTTCTATACGAAGTTGGAACTCGTGAAGCATATGGTGAAGCACTCCCCGTTGAGGGAATACCAGTGCGACATATGCCAGAAGGCGTACGCGAGGAAGCACACGCTCCGGGAACATTTGAAGATACACGCGAATATAAGGAAATTCAAGTGCGAGCTATGTGAATTTACATTCGTTCAAAAGTGCAGTTGGAAATCTCATATGCGTAACAAACACAAGATTAAAGTTCCGTAA
- Protein Sequence
- MQKQWHNLSTLLKYSNVTPFKDRNDAGYICAYCFKTYPDPNVLRHHTHYDHDKEKPTYKAATGMSSFVAYLDIVDLKCTLCDQNMDSINVLTEHLVKTHDKKYYLNITDYFQPYKLTSEPVIGCCLCDEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFACRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMIQVHNVEGIKCDVCDKKFNLKSNLVLHMRSVHLKERPYVCSVCSMGFFIKRHMLGHYLATHTNERKFKCDVCGKAYATQNSKRVEVEKSFVEITIKQEPTSDTDEQDTKLETIVKIENIVTDDNVSNKVTKGPKKGSTDKKSKKDQILEMEKHLKNISTILLHTNATPIRYHDGANYVCALCPETYLLPSELKMHVQEEHDEIDKSSFMEGHRLTSYVVKLDITNLRCLICHSEIEGFDPIPHLRTAHGKELHTDIPNHILPFRFVGNGFDCVQCPKSFEHFKLIQEHMSMHYGNYICATCNAPFVNKRTMQNHANRHKKGDFPCSQCAKIFDTNRKKLNHEKYVHDGDYKRKKCPYCQEKFTNYAKKRSHMVQEHGAEPLSVKCEICKKTFSTRARLRGHTRRDHMECQHACTDCEMRFYTKLELVKHMVKHSPLREYQCDICQKAYARKHTLREHLKIHANIRKFKCELCEFTFVQKCSWKSHMRNKHKIKVP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_01508254;
- 80% Identity
- -