g9862.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000016.1:4767745-4771181[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.2e-05 0.0009 20.0 0.5 1 20 113 132 113 133 0.96 2 19 0.26 20 6.4 0.1 3 23 140 160 139 160 0.92 3 19 0.099 7.5 7.7 0.1 2 23 166 188 165 188 0.93 4 19 7.3e-05 0.0055 17.5 2.1 1 23 193 215 193 215 0.99 5 19 4.3 3.3e+02 2.5 6.2 1 21 218 238 218 239 0.94 6 19 9.7e-05 0.0074 17.1 0.4 1 23 251 274 251 274 0.96 7 19 0.013 0.97 10.5 3.0 1 23 280 302 280 302 0.96 8 19 0.12 9 7.4 0.2 1 23 336 359 336 359 0.93 9 19 0.00019 0.014 16.2 0.4 3 23 368 389 367 389 0.98 10 19 0.0022 0.17 12.9 1.4 2 21 503 522 502 523 0.93 11 19 2.7 2e+02 3.2 0.2 3 23 530 551 529 551 0.95 12 19 0.21 16 6.7 2.9 1 23 556 579 556 579 0.95 13 19 0.00015 0.011 16.6 0.2 2 23 585 606 584 606 0.96 14 19 1.9 1.4e+02 3.7 0.9 2 21 610 629 610 630 0.91 15 19 6e-05 0.0045 17.8 2.0 1 23 656 679 656 679 0.95 16 19 0.00086 0.066 14.2 0.4 1 23 685 707 685 707 0.92 17 19 0.065 5 8.3 0.1 1 23 713 735 713 735 0.97 18 19 0.0035 0.27 12.3 0.8 1 23 741 764 741 764 0.94 19 19 1.3e-05 0.001 19.9 2.8 2 23 771 793 770 793 0.95
Sequence Information
- Coding Sequence
- ATGGAGATATCTGTCATGGCTCGTCTTGTCGAGGAGGAAATCGAACTACCCGCGGGCCTGTGCTGCAACTGCACGAACAGCGCCATCTCTGGGTGGCAGTTCAGACGGCTATGTCTCGAATCGAATAGAAATTGGATGAAAACAACACTATTATTGTCGAAAACGAAAATCCAGCCGACAAACAAAGATAAAACCATTTTCATTGGCTGTAACACTTTGATAAGAGACAACGTTGTAATTAAACACAAAACGGATGCCATCGAAAGACTTAATTTACTCATCGGTTCCAAAAAGAAAGCGAGATCCAAATACAAGAAGAAtgatataactaatatttacaaGTGTAAGGATTGCGGCAAAGATTTCACTGTTCCTTATTTCTTGAATCGTCATTTGTTGTGTACGAAAAAACGAGCTTGCACCATCTGCGGTAAGATCTTACCGAGGGAACGTTTGGCCAGACATTTGAACAAAGTCCACGCCAAGTTTGTACTTAATTGCGATATCTGCGAGAAATTATTCGACGAGCAAGTCGAATTGGATAATCACAAGATGTTATTACACGGCGATAATTCATATCAGTGTACAACGTGCAAGAATGGTTTCAAAAACGAGAGATCGCTCCGTGCCCATATGTACACCCACACACTTTTCCATTGCTCGTCATGTAACGCAAGTTATGAGAATCGAAAATGTTATACGCATCACAGGAAAATATGCGACGGTTCGAAACACGCGACGGAAGGTATATACGAGTGCAACGATTGCGGTAATATATACACGAAGAAGCCTTCGTTGAAGGTTCATATCAATCAGAAACATTTGAACGTTCTGCCGTACGTTTGTCAGATATGCGGTAAACGTAGTTCGACGAAGAATCATCACAAAGCCCACGAACTTATACACAAAACGGAGAGGAAAGTCTACCAATGTTTCTGCGGTGCGAAAATGCTGACAGAGCTCGGTTTCAATATGCACCAGAGGATACATTCCGGCGAGAAGCCGTACGAGTGTGGTGTGTGCGGCGAGAGGTTCCTGTCGGCTTCGAGGAGGTTGGATCACATCAAGCGAAGACACAGGAGTAAGGAGATGGCGCACGGTTGTGACAAATGCGAGGCTAGGTTCGTTAGGccgttcgaattgaaaaaacattacaaaacagCGCATTTGATGAGCcCGCAGGACGAATATTTATTCCCAAAGGGTTTTTGTATAGCTTGTACGAGTGTTGCGATAGCCTCGTACGAGTTCAGAGTGTTGGTACGAAAGTCTGAGAAGCTATGGACGAACTGCATAGAGTCGCTTCAAACTATCCCAACTTTGGTCACATCCCAGAGATCGATTTACGCGATCGTACGTAACAACTTACTAATTCATACGGTCAGTAACTTCGAGGGTAACGCTAAAGACTTGCTGGACCACCTCACGGATAGGTTTGTAGCTAGGAAGGTTTTAATAGAGAGGAAGCCGAGGCACCCGAGACACCCCAGGGCCGGCCCGTCGTGTAGCTGCAGAGACTGTGGTAAAACTTTCCTCAGCCCGTATTATTTGAATATGCATTTGCGTAATAGCGGCCAGAAGGAGGCGTGCTGGCTCTGTGGCGCGATGTTGATAAGAGGTAAGGATATGCACGAACACATGTCGAGAGTTCACAGGACGGACATGTTTTTGTGTACCGAATGCCCGATGCTGTTCAAAAGCGAGCTGGAACGGAAGAGGCACATTAAGAAATGTCACGGGCCAGGCGTGCTGACGTGCGCCGACTGCGGGAGAACGTTCCAGAGGCCCGGATCGTTCGAAGTGCATTCGCAAATGCACGCGGTGAGGACGTGCCGGGCCTGCGGCGCGCAGTTCGCGAACCGCGGTTGTTACAGGGAGCACAGGTCGAAGTGCGAACCGAACGCAAAGCCGGACTTGAGAACGATACCGAGGAACAAACGATCGAACATTCGAGACCCGGCCACGTTCACCTGTGACTATTGTAATAAGACGTATCACTCGCGTCCTCAGCTAAAGAATCACATACTGTGGATCCATATGGACATACGACCACACCAGTGCCAATGGTGCGGGAAGCGTTTCTACACACCGGCGCGCCTAGCTGAACATTCGGTCGTGCACACGCGCGTCAGGAACTTCGAGTGCGATATTTGTGGCGCGAAATTAGTgtccaagatggcggccgtgTACCATAGACGGAGGCATACGGGCGAGAGGCCGTACGAGTGTCAGGATTGCGGTGAGAAGTTTATATCGTCGTCTCGGAGATCGGAACACGCGAAACGCAGACACAATCGAGGATCTCGCCTCCAATGTCCTCAGTGTCACGCGAGTTTCGTTAGGAATCATGAATTGAAGAAGCATATGGATAAAGTTCATAATCCAGACAATAACTTGacgcttaaaattaaaaaagaaaagattttCCCAATGGTGACAACTCAAAAACTTTAA
- Protein Sequence
- MEISVMARLVEEEIELPAGLCCNCTNSAISGWQFRRLCLESNRNWMKTTLLLSKTKIQPTNKDKTIFIGCNTLIRDNVVIKHKTDAIERLNLLIGSKKKARSKYKKNDITNIYKCKDCGKDFTVPYFLNRHLLCTKKRACTICGKILPRERLARHLNKVHAKFVLNCDICEKLFDEQVELDNHKMLLHGDNSYQCTTCKNGFKNERSLRAHMYTHTLFHCSSCNASYENRKCYTHHRKICDGSKHATEGIYECNDCGNIYTKKPSLKVHINQKHLNVLPYVCQICGKRSSTKNHHKAHELIHKTERKVYQCFCGAKMLTELGFNMHQRIHSGEKPYECGVCGERFLSASRRLDHIKRRHRSKEMAHGCDKCEARFVRPFELKKHYKTAHLMSPQDEYLFPKGFCIACTSVAIASYEFRVLVRKSEKLWTNCIESLQTIPTLVTSQRSIYAIVRNNLLIHTVSNFEGNAKDLLDHLTDRFVARKVLIERKPRHPRHPRAGPSCSCRDCGKTFLSPYYLNMHLRNSGQKEACWLCGAMLIRGKDMHEHMSRVHRTDMFLCTECPMLFKSELERKRHIKKCHGPGVLTCADCGRTFQRPGSFEVHSQMHAVRTCRACGAQFANRGCYREHRSKCEPNAKPDLRTIPRNKRSNIRDPATFTCDYCNKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRSEHAKRRHNRGSRLQCPQCHASFVRNHELKKHMDKVHNPDNNLTLKIKKEKIFPMVTTQKL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824963;
- 90% Identity
- -
- 80% Identity
- -